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contig_metadata

26 rows where bioproject = "PRJNA376117", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 26 ✖

tax_kingdom 1

  • Metazoa · 26 ✖

tax_clade 1

bioproject 1

  • PRJNA376117 · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3624560 3624560 PRJNA376117_P_NODE_8123_length_470_cov_2.481108_g7822_i0 PRJNA376117 8123 470 2.481108 11.6612076 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 431 5.0199999999999983e-116   NTclustered gi|1376144465|ref|XM_024652690.1| 34506 g7822 i0 83.405 96.7617021276596 464 77 99 0 7 470 987 524 Strongyloides ratti Actin, alpha cardiac muscle 1 (SRAE_2000170700), partial mRNA blastn 45478 431 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
5503433 5503433 PRJNA376117_P_NODE_26845_length_276_cov_1.896552_g26543_i0 PRJNA376117 26845 276 1.896552 5.23448352 Metazoa 33208 Nematoda Nematoda 130 7.29e-37   NR KAK5972802.1 6319 g26543 i0 80 16.8913043478261 80 16 87 0 36 275 1 80 KAK5972802.1 40S ribosomal protein S14 [Trichostrongylus colubriformis] diamond 4662 131 0.99236641221374 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Trichostrongylus Trichostrongylus colubriformis
6777507 6777507 PRJNA376117_P_NODE_26486_length_278_cov_1.126829_g26184_i0 PRJNA376117 26486 278 1.126829 3.13258462 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 305 1.78e-78   NTclustered gi|150984495|gb|EF634890.1| 452809 g26184 i0 87.266 96.0071942446043 267 34 96 0 10 276 393 127 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 26690 305 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
9327969 9327969 PRJNA376117_P_NODE_27428_length_274_cov_1.532338_g27126_i0 PRJNA376117 27428 274 1.532338 4.19860612 Strongyloides papillosus 174720 Nematoda Nematoda 265 2.97e-66   NTclustered gi|687022643|emb|LM525557.1| 174720 g27126 i0 90.863 71.6423357664234 197 18 72 0 73 269 634366 634170 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000003 blastn 19630 265 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
14428904 14428904 PRJNA376117_P_NODE_7212_length_499_cov_7.223005_g6911_i0 PRJNA376117 7212 499 7.223005 36.04279495 Caenorhabditis elegans 6239 Nematoda Nematoda 54.7 0.014   NTclustered gi|1831517864|ref|NM_001136422.4| 6239 g6911 i0 100 0.232464929859719 29 0 6 0 54 82 8 36 Caenorhabditis elegans FIP (Fungus-Induced Protein) Related (fipr-2), partial mRNA blastn 116 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
16977278 16977278 PRJNA376117_P_NODE_32254_length_256_cov_1.792350_g31952_i0 PRJNA376117 32254 256 1.79235 4.588416 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 159 5.54e-43   NR KAE9550833.1 2598192 g31952 i0 83.5 13.93359375 85 14 99.6 0 2 256 188 272 KAE9550833.1 hypothetical protein FO519_005961 [Halicephalobus sp. NKZ332] diamond 3567 159 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
17651311 17651311 PRJNA376117_P_NODE_27414_length_274_cov_1.532338_g27112_i0 PRJNA376117 27414 274 1.532338 4.19860612 root 1 Root_unresolved Root_unresolved 101 3.21e-23   NR KJH49214.1 29172 g27112 i0 54.4 20.6386861313869 90 40 98.5 1 1 270 144 232 KJH49214.1 putative peptide chain release factor 1 [Dictyocaulus viviparus] diamond 5655 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Dictyocaulus Dictyocaulus viviparus
20801110 20801110 PRJNA376117_P_NODE_10497_length_415_cov_1.552632_g10195_i0 PRJNA376117 10497 415 1.552632 6.4434228 Opisthokonta 33154 Nematoda Nematoda 234 4.87e-76   NR CAJ0579990.1 96644 g10195 i0 75.2 18.8024096385542 137 34 99 0 413 3 1 137 CAJ0579990.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 7803 236 0.991525423728814 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
20801213 20801213 PRJNA376117_P_NODE_19557_length_312_cov_2.167364_g19255_i0 PRJNA376117 19557 312 2.167364 6.76217568 Strongyloides ratti 34506 Nematoda Nematoda 233 9.71e-57   NTclustered gi|1376156759|ref|XM_024645793.1| 34506 g19255 i0 81.884 49.4839743589744 276 50 88 0 6 281 276 1 Strongyloides ratti Ras-like protein 3 (SRAE_X000250800), partial mRNA blastn 15439 233 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
20801416 20801416 PRJNA376117_P_NODE_33237_length_252_cov_2.564246_g32935_i0 PRJNA376117 33237 252 2.564246 6.46189992 Opisthokonta 33154 Nematoda Nematoda 82.4 2.27e-16   NR CAJ0580877.1 96644 g32935 i0 72.9 3.92857142857143 59 13 66.7 1 170 3 1 59 CAJ0580877.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 990 83.2 0.990384615384615 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
22076702 22076702 PRJNA376117_P_NODE_7578_length_486_cov_1.351090_g7277_i0 PRJNA376117 7578 486 1.35109 6.5662974 Strongyloides ratti 34506 Nematoda Nematoda 234 3.23e-76   NR XP_024506279.1 34506 g7277 i0 82.4 5.25925925925926 142 22 85.8 1 67 483 10 151 XP_024506279.1 40S ribosomal protein S14 [Strongyloides ratti] diamond 2556 234 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
24626000 24626000 PRJNA376117_P_NODE_20100_length_308_cov_1.902128_g19798_i0 PRJNA376117 20100 308 1.902128 5.85855424 Caenorhabditis briggsae 6238 Nematoda Nematoda 137 7.7199999999999995e-28   NTclustered gi|268530073|ref|XM_002630117.1| 6238 g19798 i0 85.606 4.87662337662338 132 17 43 2 42 172 124 254 Caenorhabditis briggsae Protein CBR-IFF-2 (Cbr-iff-2), partial mRNA blastn 1502 137 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
27074857 27074857 PRJNA376117_P_NODE_18642_length_320_cov_1.246964_g18340_i0 PRJNA376117 18642 320 1.246964 3.9902848 Aphelenchoides avenae 70226 Nematoda Nematoda 58.9 4.72e-8   NR KAH7722559.1 70226 g18340 i0 41.1 1.3125 73 39 67.5 3 58 273 39 108 KAH7722559.1 E3 ubiquitin-protein ligase TRIM23 [Aphelenchoides avenae] diamond 420 58.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
27201113 27201113 PRJNA376117_P_NODE_19222_length_315_cov_1.694215_g18920_i0 PRJNA376117 19222 315 1.694215 5.33677725 Steinernema hermaphroditum 289476 Nematoda Nematoda 48.1 0.0011   NR KAK0408212.1 289476 g18920 i0 69.2 0.247619047619048 26 8 24.8 0 275 198 732 757 KAK0408212.1 hypothetical protein QR680_003833 [Steinernema hermaphroditum] diamond 78 48.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema hermaphroditum
27264623 27264623 PRJNA376117_P_NODE_44203_length_241_cov_0.916667_g43901_i0 PRJNA376117 44203 241 0.916667 2.20916747 Steinernema hermaphroditum 289476 Nematoda Nematoda 45.4 0.00407   NR KAK0419739.1 289476 g43901 i0 42.6 0.672199170124481 54 29 66 2 25 183 496 548 KAK0419739.1 hypothetical protein QR680_014298 [Steinernema hermaphroditum] diamond 162 45.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema hermaphroditum
27313458 27313458 PRJNA376117_P_NODE_16663_length_337_cov_1.750000_g16361_i0 PRJNA376117 16663 337 1.75 5.8975 Rhabditida 6236 Nematoda Nematoda 104 2.13e-23   NR KHN82871.1 6265 g16361 i0 57.3 5.35905044510386 75 32 66.8 0 228 4 102 176 KHN82871.1 DDB1- and CUL4-associated factor 7 [Toxocara canis] diamond 1806 105 0.990476190476191 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
28022588 28022588 PRJNA376117_P_NODE_26345_length_278_cov_1.502439_g26043_i0 PRJNA376117 26345 278 1.502439 4.17678042 Loa loa 7209 Nematoda Nematoda 82.8 4.07e-17   NR XP_003139952.1 7209 g26043 i0 60 0.809352517985611 75 30 80.9 0 1 225 134 208 XP_003139952.1 50S ribosomal protein L16 [Loa loa] diamond 225 82.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
28969712 28969712 PRJNA376117_P_NODE_34908_length_250_cov_0.870056_g34606_i0 PRJNA376117 34908 250 0.870056 2.17514 Aphelenchoides avenae 70226 Nematoda Nematoda 124 7.6799999999999996e-31   NR KAH7732071.1 70226 g34606 i0 84.1 5.832 82 12 97.2 1 7 249 450 531 KAH7732071.1 CBN-ATF-7 protein [Aphelenchoides avenae] diamond 1458 124 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
29695503 29695503 PRJNA376117_P_NODE_16190_length_342_cov_1.141264_g15888_i0 PRJNA376117 16190 342 1.141264 3.90312288 Aphelenchoides besseyi 269767 Nematoda Nematoda 49.7 4.04e-4   NR KAI6201726.1 269767 g15888 i0 34.9 1.45614035087719 83 52 71.1 2 5 247 398 480 KAI6201726.1 hypothetical protein M3Y96_00873000 [Aphelenchoides besseyi] diamond 498 49.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
30643445 30643445 PRJNA376117_P_NODE_30073_length_264_cov_2.418848_g29771_i0 PRJNA376117 30073 264 2.418848 6.38575872 Aphelenchoides fujianensis 1052528 Nematoda Nematoda 78.2 1.26e-14   NR KAI6216209.1 1052528 g29771 i0 57.9 4.68181818181818 57 24 64.8 0 258 88 327 383 KAI6216209.1 hypothetical protein M3Y99_01833200 [Aphelenchoides fujianensis] diamond 1236 78.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides fujianensis
30643448 30643448 PRJNA376117_P_NODE_33373_length_252_cov_1.424581_g33071_i0 PRJNA376117 33373 252 1.424581 3.58994412 Steinernema carpocapsae 34508 Nematoda Nematoda 60.5 2.35e-8   NR TKR60912.1 34508 g33071 i0 40.8 2.80952380952381 76 38 82.1 1 235 29 298 373 TKR60912.1 hypothetical protein L596_028093 [Steinernema carpocapsae] diamond 708 60.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
30787111 30787111 PRJNA376117_P_NODE_45434_length_205_cov_4.643939_g45132_i0 PRJNA376117 45434 205 4.643939 9.52007495 Rhabditida 6236 Nematoda Nematoda 47.8 3.66e-4   NR RCN43293.1 29170 g45132 i0 40 1.18536585365854 40 24 58.5 0 85 204 18 57 RCN43293.1 NAD dependent epimerase/dehydratase family protein, partial [Ancylostoma caninum] diamond 243 47.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
31211876 31211876 PRJNA376117_P_NODE_15515_length_348_cov_1.680000_g15213_i0 PRJNA376117 15515 348 1.68 5.8464 Aphelenchoides bicaudatus 293665 Nematoda Nematoda 55.5 4.05e-6   NR KAI6175589.1 293665 g15213 i0 33 0.862068965517241 100 61 81.9 2 15 299 1 99 KAI6175589.1 Arp2/3 complex 34 kDa subunit [Aphelenchoides bicaudatus] diamond 300 55.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus
31292622 31292622 PRJNA376117_P_NODE_24295_length_285_cov_1.377358_g23993_i0 PRJNA376117 24295 285 1.377358 3.9254703 Metazoa 33208 Nematoda Nematoda 51.2 6.47e-5   NR KAL3072439.1 97005 g23993 i0 49 3.09473684210526 49 25 51.6 0 16 162 153 201 KAL3072439.1 hypothetical protein niasHS_017413 [Heterodera schachtii] diamond 882 51.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera schachtii
31514374 31514374 PRJNA376117_P_NODE_12816_length_380_cov_0.801303_g12514_i0 PRJNA376117 12816 380 0.801303 3.0449514 Metazoa 33208 Nematoda Nematoda 119 2.57e-28   NR KHN87451.1 6265 g12514 i0 59.6 11.8421052631579 94 38 74.2 0 285 4 478 571 KHN87451.1 CUGBP Elav-like family member 1-A [Toxocara canis] diamond 4500 119 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
31640570 31640570 PRJNA376117_P_NODE_41376_length_244_cov_0.900585_g41074_i0 PRJNA376117 41376 244 0.900585 2.1974274 Metazoa 33208 Nematoda Nematoda 81.6 5.59e-16   NR EFO93005.1 31234 g41074 i0 59 5.38524590163934 61 25 75 0 238 56 324 384 EFO93005.1 hypothetical protein CRE_10225 [Caenorhabditis remanei] diamond 1314 82.4 0.990291262135922 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;