RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA376117", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA376117 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27801563 27801563 PRJNA376117_P_NODE_37844_length_247_cov_1.545977_g37542_i0 PRJNA376117 37844 247 1.545977 3.81856319 Candidatus Mycoplasma haematobovis 432608 Bacteria Bacteria 135 2.78e-36   NR WP_187150734.1 432608 g37542 i0 100 0.765182186234818 63 0 76.5 0 3 191 123 185 WP_187150734.1 hypothetical protein [Candidatus Mycoplasma haematobovis] diamond 189 135 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma haematobovis
29253582 29253582 PRJNA376117_P_NODE_26809_length_276_cov_2.591133_g26507_i0 PRJNA376117 26809 276 2.591133 7.15152708 Mycoplasmopsis mucosicanis 458208 Bacteria Bacteria 162 7.49e-44   NR WP_141484141.1 458208 g26507 i0 97.8 1 92 2 100 0 276 1 76 167 WP_141484141.1 GA module-containing protein [Mycoplasmopsis mucosicanis] diamond 276 162 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis mucosicanis
32872958 32872958 PRJNA376117_P_NODE_39060_length_246_cov_0.890173_g38758_i0 PRJNA376117 39060 246 0.890173 2.18982558 Bacillati 1783272 Bacteria Bacteria 128 4.84e-33   NR MCI5542900.1 37628 g38758 i0 76.8 3 82 19 100 0 246 1 212 293 MCI5542900.1 pyrimidine-nucleoside phosphorylase [Mollicutes bacterium] diamond 738 128 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       Mollicutes bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;