RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA376117", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA376117 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27091998 27091998 PRJNA376117_P_NODE_21462_length_298_cov_1.808889_g21160_i0 PRJNA376117 21462 298 1.808889 5.39048922 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 150 2.9299999999999996e-42   NR ETO32231.1 46433 g21160 i0 76.3 2.92953020134228 97 23 97.7 0 293 3 203 299 ETO32231.1 ATP citrate lyase [Reticulomyxa filosa] diamond 873 150 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27281738 27281738 PRJNA376117_P_NODE_14723_length_357_cov_1.577465_g14421_i0 PRJNA376117 14723 357 1.577465 5.63155005 Suessiales 89954 SAR_Eukaryotes SAR_Eukaryotes 92.8 1.03e-19   NR ETO30210.1 46433 g14421 i0 45.5 2.69747899159664 99 52 83.2 1 347 51 209 305 ETO30210.1 hypothetical protein RFI_06914 [Reticulomyxa filosa] diamond 963 93.2 0.995708154506438 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32541264 32541264 PRJNA376117_P_NODE_26299_length_278_cov_1.502439_g25997_i0 PRJNA376117 26299 278 1.502439 4.17678042 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 144 4.74e-39   NR ETO10231.1 46433 g25997 i0 72 0.884892086330935 82 23 88.5 0 31 276 109 190 ETO10231.1 hypothetical protein RFI_27149 [Reticulomyxa filosa] diamond 246 144 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;