RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA376117", tax_clade = "Sar" and tax_phylum = "Endomyxa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA376117 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11878429 11878429 PRJNA376117_P_NODE_18130_length_324_cov_2.171315_g17828_i0 PRJNA376117 18130 324 2.171315 7.0350606 Arachnula sp. CL22 862246 SAR_Eukaryotes SAR_Eukaryotes 206 2.21e-48   NTclustered gi|301014696|gb|GQ377694.1| 862246 g17828 i0 83.945 14.0956790123457 218 32 67 3 52 267 232 16 Arachnula sp. CL22 ribosomal protein S23a (rps23a) mRNA, partial cds blastn 4567 206 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula sp. CL22
14428634 14428634 PRJNA376117_P_NODE_30552_length_263_cov_1.215789_g30250_i0 PRJNA376117 30552 263 1.215789 3.19752507 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 150 1.22e-44   NR CEO97530.1 37360 g30250 i0 85.1 0.992395437262357 87 13 99.2 0 263 3 36 122 CEO97530.1 hypothetical protein PBRA_000875 [Plasmodiophora brassicae] diamond 261 150 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27296141 27296141 PRJNA376117_P_NODE_11623_length_396_cov_2.529412_g11321_i0 PRJNA376117 11623 396 2.529412 10.01647152 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 156 8.15e-46   NR CEO99768.1 37360 g11321 i0 60.2 0.931818181818182 123 49 93.2 0 382 14 1 123 CEO99768.1 hypothetical protein PBRA_007502 [Plasmodiophora brassicae] diamond 369 156 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;