RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA376117", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA376117 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8726338 8726338 PRJNA376117_P_NODE_24127_length_285_cov_2.858491_g23825_i0 PRJNA376117 24127 285 2.858491 8.14669935 Neochlamydia 112987 Bacteria Bacteria 342 1.4e-89   NTclustered gi|29569597|gb|AY225593.1| 226902 g23825 i0 88.542 106.150877192982 288 26 100 7 1 285 3 286 Uncultured clinical Neochlamydia sp. clone WB13 16S ribosomal RNA gene, partial sequence blastn 30253 342 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia uncultured clinical Neochlamydia sp.
20199735 20199735 PRJNA376117_P_NODE_22716_length_290_cov_1.774194_g22414_i0 PRJNA376117 22716 290 1.774194 5.1451626 Parachlamydia 83551 Bacteria Bacteria 392 1.39e-104   NTclustered gi|470491594|ref|NR_077046.1| 83552 g22414 i0 91.349 118.151724137931 289 22 99 3 1 288 692 978 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 34264 392 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
21475364 21475364 PRJNA376117_P_NODE_25257_length_282_cov_1.000000_g24955_i0 PRJNA376117 25257 282 1 2.82 Candidatus Protochlamydia 282132 Bacteria Bacteria 457 4.72e-124   NTclustered gi|449714028|emb|HF565157.1| 464463 g24955 i0 96.085 111.783687943262 281 10 99 1 2 282 469 190 Uncultured Candidatus Protochlamydia sp. partial 16S rRNA gene, DGGE gel band 8/20a blastn 31523 457 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia uncultured Candidatus Protochlamydia sp.
22750696 22750696 PRJNA376117_P_NODE_9398_length_438_cov_2.745205_g9096_i0 PRJNA376117 9398 438 2.745205 12.0239979 Parachlamydia 83551 Bacteria Bacteria 409 2.18e-109   NTclustered gi|470491594|ref|NR_077046.1| 83552 g9096 i0 83.864 93.2351598173516 440 60 99 10 1 435 7 440 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 40837 409 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
27074859 27074859 PRJNA376117_P_NODE_29162_length_268_cov_1.471795_g28860_i0 PRJNA376117 29162 268 1.471795 3.9444106 Candidatus Neptunochlamydia vexilliferae 1651774 Bacteria Bacteria 57 4.36e-7   NR WP_194846953.1 1651774 g28860 i0 40.7 0.66044776119403 59 35 66 0 48 224 244 302 WP_194846953.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase [Candidatus Neptunochlamydia vexilliferae] diamond 177 57 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Neptunichlamydia Candidatus Neptunichlamydia vexilliferae
30628901 30628901 PRJNA376117_P_NODE_30673_length_262_cov_1.629630_g30371_i0 PRJNA376117 30673 262 1.62963 4.2696306 Parachlamydiaceae 92713 Bacteria Bacteria 134 2.0499999999999998e-34   NR WP_059060408.1 389348 g30371 i0 80.2 1.96946564885496 86 17 98.5 0 3 260 567 652 WP_059060408.1 methyl-accepting chemotaxis protein [Candidatus Protochlamydia naegleriophila] diamond 516 134 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
31609023 31609023 PRJNA376117_P_NODE_34816_length_250_cov_0.870056_g34514_i0 PRJNA376117 34816 250 0.870056 2.17514 Candidatus Protochlamydia 282132 Bacteria Bacteria 89.7 1.2e-18   NR WP_226996109.1 1785087 g34514 i0 68.1 6.144 72 22 85.2 1 250 38 350 421 WP_226996109.1 ribonuclease R [Candidatus Protochlamydia sp. W-9] diamond 1536 89.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia sp. W-9

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;