RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA376117", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA376117 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20801451 20801451 PRJNA376117_P_NODE_35137_length_250_cov_0.870056_g34835_i0 PRJNA376117 35137 250 0.870056 2.17514 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 139 6.16e-39   NR HXI99193.1 2026741 g34835 i0 77.1 2.988 83 19 99.6 0 1 249 136 218 HXI99193.1 terminase [Gemmatimonadaceae bacterium] diamond 747 139 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28843190 28843190 PRJNA376117_P_NODE_18848_length_318_cov_1.959184_g18546_i0 PRJNA376117 18848 318 1.959184 6.23020512 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 99.8 1.2500000000000001e-22   NR MDE2763946.1 2026742 g18546 i0 69.8 1.18867924528302 63 19 59.4 0 318 130 113 175 MDE2763946.1 hypothetical protein [Gemmatimonadota bacterium] diamond 378 99.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;