RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA371613", tax_phylum = "Thermodesulfobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA371613 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8052803 8052803 PRJNA371613_P_NODE_7727_length_169_cov_0.969697_g7551_i0 PRJNA371613 7727 169 0.969697 1.63878793 Desulfovibrio piger 901 Bacteria Bacteria 60.2 8.43e-5   NTclustered gi|2548467271|emb|OX636706.1| 901 g7551 i0 97.143 0.207100591715976 35 1 21 0 1 35 3018353 3018319 Desulfovibrio piger isolate DSM32187 genome assembly, chromosome: 1 blastn 35 60.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio piger
28717143 28717143 PRJNA371613_P_NODE_8947_length_163_cov_1.079365_g8771_i0 PRJNA371613 8947 163 1.079365 1.75936495 Syntrophobacteraceae bacterium 2052185 Bacteria Bacteria 41.6 0.0319   NR MCU0588686.1 2052185 g8771 i0 41.9 0.791411042944785 43 23 75.5 1 11 133 78 120 MCU0588686.1 alpha/beta hydrolase-fold protein [Syntrophobacteraceae bacterium] diamond 129 41.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae   Syntrophobacteraceae bacterium
28955416 28955416 PRJNA371613_P_NODE_8188_length_167_cov_0.984615_g8012_i0 PRJNA371613 8188 167 0.984615 1.64430705 root 1 Root_unresolved Root_unresolved 45.4 0.0015   NR HIP82064.1 65555 g8012 i0 54.5 2.96407185628743 33 15 59.3 0 69 167 133 165 HIP82064.1 reverse transcriptase-like protein [Desulfocapsa sulfexigens] diamond 495 45.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfocapsa Desulfocapsa sulfexigens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;