RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA371613", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA371613 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8052791 8052791 PRJNA371613_P_NODE_5507_length_200_cov_1.263804_g5331_i0 PRJNA371613 5507 200 1.263804 2.527608 Bradybaena similaris 145626 Mollusca Mollusca 113 7.860000000000001e-21   NTclustered gi|2912997258|dbj|AP039602.1| 145626 g5331 i0 77.949 61.99 195 34 97 6 2 195 53749156 53749342 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 21, sequence blastn 12398 113 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
19525412 19525412 PRJNA371613_P_NODE_8776_length_164_cov_1.007874_g8600_i0 PRJNA371613 8776 164 1.007874 1.65291336 Patella vulgata 6465 Mollusca Mollusca 172 1.0099999999999999e-38   NTclustered gi|2506339445|ref|XM_056102642.1| 6465 g8600 i0 100 5.09146341463415 93 0 57 0 1 93 2258 2166 PREDICTED: Patella vulgata uncharacterized LOC130013975 (LOC130013975), mRNA blastn 835 172 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;