RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA358490", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA358490 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30706699 30706699 PRJNA358490_P_NODE_1594_length_1091_cov_7.058935_g1472_i0 PRJNA358490 1594 1091 7.058935 77.01298085 Blyttiomyces sp. JEL 2750429 Fungi Fungi 54.7 5.05e-4   NR KAJ3331933.1 2724214 g1472 i0 44.1 0.629697525206233 93 41 23.1 3 760 509 124 214 KAJ3331933.1 hypothetical protein HDU76_001762 [Blyttiomyces sp. JEL0837] diamond 687 54.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes     Blyttiomyces Blyttiomyces sp. JEL0837
31830192 31830192 PRJNA358490_P_NODE_16897_length_161_cov_2.991803_g16553_i0 PRJNA358490 16897 161 2.991803 4.81680283 Fungi 4751 Fungi Fungi 49.3 2.83e-5   NR KAJ3401243.1 4814 g16553 i0 100 24.8571428571429 23 0 42.9 0 2 70 147 169 KAJ3401243.1 histone H3.2 [Chytriomyces hyalinus] diamond 4002 49.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces hyalinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;