RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA358490", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA358490 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3623901 3623901 PRJNA358490_P_NODE_18203_length_151_cov_3.616071_g17859_i0 PRJNA358490 18203 151 3.616071 5.46026721 Asterionella 35129 SAR_Eukaryotes SAR_Eukaryotes 274 2.42e-69   NTclustered gi|2245330063|gb|OK502174.1| 210441 g17859 i0 99.338 99.7417218543046 151 1 100 0 1 151 191 41 Asterionella formosa voucher Mall10 18S small subunit ribosomal RNA gene, partial sequence blastn 15061 274 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Asterionella Asterionella formosa
27612065 27612065 PRJNA358490_P_NODE_6684_length_504_cov_6.296774_g6354_i0 PRJNA358490 6684 504 6.296774 31.73574096 Discostella pseudostelligera 259834 SAR_Eukaryotes SAR_Eukaryotes 57.4 4.36e-6   NR KAL3770804.1 259834 g6354 i0 34.8 0.68452380952381 115 67 64.9 3 32 358 1002 1114 KAL3770804.1 hypothetical protein ACHAWU_006363 [Discostella pseudostelligera] diamond 345 57.4 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Discostella Discostella pseudostelligera
32305309 32305309 PRJNA358490_P_NODE_15299_length_178_cov_2.705036_g14955_i0 PRJNA358490 15299 178 2.705036 4.81496408 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 58.5 1.5e-9   NR KAI2500166.1 210448 g14955 i0 57.1 6.70786516853933 49 20 82.6 1 3 149 29 76 KAI2500166.1 hypothetical protein MHU86_14310 [Fragilaria crotonensis] diamond 1194 58.9 0.99320882852292 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
32509636 32509636 PRJNA358490_P_NODE_799_length_1409_cov_7.265693_g731_i0 PRJNA358490 799 1409 7.265693 102.37361437 Cylindrotheca closterium 2856 SAR_Eukaryotes SAR_Eukaryotes 60.1 1e-5   NR CAJ1957534.1 2856 g731 i0 37.8 0.174591909155429 82 41 17.5 2 385 140 80 151 CAJ1957534.1 unnamed protein product [Cylindrotheca closterium] diamond 246 60.1 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;