RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA358490", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA358490 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18924686 18924686 PRJNA358490_P_NODE_2175_length_960_cov_10.305103_g2025_i0 PRJNA358490 2175 960 10.305103 98.9289888 Koerneria 318468 Nematoda Nematoda 195 1.53e-44   NTclustered gi|410992295|gb|JX163970.1| 358044 g2025 i0 76.259 25.7489583333333 417 69 41 19 472 866 1435 1027 Koerneria sp. RS1982 28S ribosomal RNA gene, partial sequence blastn 24719 195 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Koerneria Koerneria sp. RS1982
32463340 32463340 PRJNA358490_P_NODE_11919_length_253_cov_1.523364_g11575_i0 PRJNA358490 11919 253 1.523364 3.85411092 Opisthokonta 33154 Nematoda Nematoda 44.3 0.00119   NR KHN88077.1 6265 g11575 i0 43.8 4.58893280632411 64 36 75.9 0 5 196 1 64 KHN88077.1 Translation machinery-associated protein 7 [Toxocara canis] diamond 1161 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;