RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA358490", tax_clade = "Opisthokonta" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA358490 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10602877 10602877 PRJNA358490_P_NODE_8109_length_430_cov_2.828645_g7768_i0 PRJNA358490 8109 430 2.828645 12.1631735 Blastocladiella britannica 64508 Fungi Fungi 122 4.469999999999999e-31   NR KAI9222377.1 64508 g7768 i0 55.8 0.725581395348837 104 46 72.6 0 80 391 2 105 KAI9222377.1 PITH domain-containing protein [Blastocladiella britannica] diamond 312 122 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
26726293 26726293 PRJNA358490_P_NODE_701_length_1470_cov_35.614955_g643_i0 PRJNA358490 701 1470 35.614955 523.5398385 Paraphysoderma sedebokerense 1500003 Fungi Fungi 130 4.28e-29   NR KAI9136525.1 1500003 g643 i0 32.8 0.930612244897959 250 141 49 7 1229 510 25 257 KAI9136525.1 hypothetical protein BKA69DRAFT_1178847 [Paraphysoderma sedebokerense] diamond 1368 130 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
27296128 27296128 PRJNA358490_P_NODE_7683_length_451_cov_8.036408_g7342_i0 PRJNA358490 7683 451 8.036408 36.24420008 Paraphysoderma sedebokerense 1500003 Fungi Fungi 72 4.28e-13   NR KAI9145511.1 1500003 g7342 i0 45.5 0.585365853658537 88 47 58.5 1 383 120 18 104 KAI9145511.1 hypothetical protein BKA69DRAFT_1171965 [Paraphysoderma sedebokerense] diamond 264 72 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;