RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA358490", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA358490 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18250706 18250706 PRJNA358490_P_NODE_4235_length_685_cov_2.125387_g3993_i0 PRJNA358490 4235 685 2.125387 14.55890095 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.019   NTclustered gi|470469247|ref|XM_004341931.1| 1257118 g3993 i0 94.444 0.0525547445255474 36 1 5 1 388 423 1351 1385 Acanthamoeba castellanii str. Neff K+ channel tetramerization subfamily protein (ACA1_050340), partial mRNA blastn 36 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24625287 24625287 PRJNA358490_P_NODE_3400_length_774_cov_4.601361_g3181_i0 PRJNA358490 3400 774 4.601361 35.61453414 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 726 0   NTclustered gi|470387131|ref|XM_004334213.1| 1257118 g3181 i0 89.771 0.732558139534884 567 58 73 0 136 702 1 567 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_027050), partial mRNA blastn 567 726 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28180071 28180071 PRJNA358490_P_NODE_10046_length_330_cov_2.192440_g9704_i0 PRJNA358490 10046 330 2.19244 7.235052 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 57.8 5.41e-7   NR XP_004342275.1 1257118 g9704 i0 40.2 0.745454545454545 82 49 74.5 0 329 84 696 777 XP_004342275.1 Leucine Rich Repeat and BTB/POZ domain containing protein [Acanthamoeba castellanii str. Neff] diamond 246 57.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;