RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA358209" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA358209 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9327019 9327019 PRJNA358209_P_NODE_708_length_165_cov_0.879310_g706_i0 PRJNA358209 708 165 0.87931 1.4508615 Staphylococcus epidermidis 1282 Bacteria Bacteria 305 9.59e-79   NTclustered gi|1518959137|gb|CP033782.1| 1282 g706 i0 100 100 165 0 100 0 1 165 697328 697492 Staphylococcus epidermidis strain FDAARGOS_529 chromosome, complete genome blastn 16500 305 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis
16375639 16375639 PRJNA358209_P_NODE_213_length_218_cov_1.579882_g211_i0 PRJNA358209 213 218 1.579882 3.44414276 root 1 Root_unresolved Root_unresolved 403 4.62e-108   NTclustered gi|1214359213|gb|MF424753.1| 1613 g211 i0 100 194 218 0 100 0 1 218 445 662 Limosilactobacillus fermentum strain CAU6386 16S ribosomal RNA gene, partial sequence blastn 42292 403 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Limosilactobacillus Limosilactobacillus fermentum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;