RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA358049" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA358049 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11276398 11276398 PRJNA358049_S_NODE_9769_length_205_cov_3.076923_g9721_i0 PRJNA358049 9769 205 3.076923 6.30769215 Metazoa 33208 Mollusca Mollusca 379 7.229999999999999e-101   NTclustered gi|1928112766|gb|MT947789.1| 6523 g9721 i0 100 99.7658536585366 205 0 100 0 1 205 58 262 Lymnaea stagnalis isolate Lsta_466444 hypothetical protein mRNA, complete cds blastn 20452 379 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
11877214 11877214 PRJNA358049_S_NODE_15550_length_170_cov_2.090909_g15502_i0 PRJNA358049 15550 170 2.090909 3.5545453 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.014   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g15502 i0 100 0.164705882352941 28 0 16 0 88 115 8953149 8953122 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;