RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA358049" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA358049 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16375591 16375591 PRJNA358049_S_NODE_14273_length_177_cov_1.898438_g14225_i0 PRJNA358049 14273 177 1.898438 3.36023526 Pseudovorticella 310678 SAR_Eukaryotes SAR_Eukaryotes 296 6.26e-76   NTclustered gi|2217167748|gb|ON157273.1| 1892842 g14225 i0 98.225 95.3898305084746 169 3 95 0 1 169 339 171 Pseudovorticella sp. isolate DP127 small subunit ribosomal RNA gene, partial sequence blastn 16884 296 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Pseudovorticella Pseudovorticella sp.
18924590 18924590 PRJNA358049_S_NODE_19155_length_153_cov_2.201923_g19107_i0 PRJNA358049 19155 153 2.201923 3.36894219 Sessilida 1974272 SAR_Eukaryotes SAR_Eukaryotes 244 1.93e-60   NTclustered gi|115353909|gb|DQ868349.1| 404948 g19107 i0 95.484 100.647058823529 155 4 100 2 1 153 1448 1601 Vorticella sp. JCC-2006-4 18S small subunit ribosomal RNA gene, partial sequence blastn 15399 244 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. JCC-2006-4
24624964 24624964 PRJNA358049_S_NODE_5000_length_271_cov_14.076577_g4952_i0 PRJNA358049 5000 271 14.076577 38.14752367 Pseudovorticella sp. FG-2015 1607895 SAR_Eukaryotes SAR_Eukaryotes 460 3.4799999999999997e-125   NTclustered gi|759083559|gb|KM222176.1| 1607895 g4952 i0 98.106 95.5387453874539 264 5 97 0 1 264 169 432 Pseudovorticella sp. FG-2015 voucher SZ2010032108 large subunit ribosomal RNA gene, partial sequence blastn 25891 460 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Pseudovorticella Pseudovorticella sp. FG-2015

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;