RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA358009" and tax_phylum = "Thermotogota"

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tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA358009 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5501790 5501790 PRJNA358009_P_NODE_13305_length_166_cov_5.743590_g13236_i0 PRJNA358009 13305 166 5.74359 9.5343594 Fervidobacterium gondwanense 44754 Bacteria Bacteria 268 1.27e-67   NTclustered gi|2793121053|gb|CP126498.1| 44754 g13236 i0 96.875 89.3614457831325 160 5 96 0 7 166 974052 973893 Fervidobacterium gondwanense strain 13770 chromosome, complete genome blastn 14834 268 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium gondwanense
13151844 13151844 PRJNA358009_P_NODE_10631_length_178_cov_10.674419_g10562_i0 PRJNA358009 10631 178 10.674419 19.00046582 Mesotoga infera 1236046 Bacteria Bacteria 322 1.04e-83   NTclustered gi|1417721526|emb|LS974202.1| 1236046 g10562 i0 99.435 5.98876404494382 177 1 99 0 1 177 1098705 1098881 Mesotoga infera isolate MESINF1 genome assembly, chromosome: MESINF blastn 1066 322 1 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga infera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;