contig_metadata
13 rows where bioproject = "PRJNA358009", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1672991 | 1672991 | PRJNA358009_P_NODE_3762_length_327_cov_2.453237_g3699_i0 | PRJNA358009 | 3762 | 327 | 2.453237 | 8.02208499 | Pestivirus bovis | 3052619 | Viruses | Viruses | 156 | 2.28e-33 | NTclustered | gi|2625903273|gb|ON676187.1| | 11099 | g3699 | i0 | 96.774 | 50.2935779816514 | 93 | 3 | 28 | 0 | 228 | 320 | 8582 | 8490 | Bovine viral diarrhea virus 1 strain Chilgok, complete genome | blastn | 16446 | 156 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 2348448 | 2348448 | PRJNA358009_P_NODE_8302_length_201_cov_3.427632_g8233_i0 | PRJNA358009 | 8302 | 201 | 3.427632 | 6.88954032 | Pestivirus | 11095 | Viruses | Viruses | 255 | 1.24e-63 | NTclustered | gi|2088281168|dbj|LC648387.1| | 11099 | g8233 | i0 | 92.655 | 88.0248756218905 | 177 | 13 | 88 | 0 | 18 | 194 | 467 | 291 | Bovine viral diarrhea virus 1 BVDV/Rikubetsu/1283/14 gene for polyprotein, partial cds | blastn | 17693 | 255 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 4225372 | 4225372 | PRJNA358009_P_NODE_12524_length_169_cov_1.700000_g12455_i0 | PRJNA358009 | 12524 | 169 | 1.7 | 2.873 | Pestivirus bovis | 3052619 | Viruses | Viruses | 276 | 7.69e-70 | NTclustered | gi|1350888790|gb|KY852366.1| | 11099 | g12455 | i0 | 96.951 | 96.9230769230769 | 164 | 5 | 97 | 0 | 6 | 169 | 34 | 197 | Bovine viral diarrhea virus 1 isolate S1118 E2 glycoprotein gene, partial cds | blastn | 16380 | 276 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 8051608 | 8051608 | PRJNA358009_P_NODE_7327_length_253_cov_5.544118_g7259_i0 | PRJNA358009 | 7327 | 253 | 5.544118 | 14.02661854 | Pestivirus bovis | 3052619 | Viruses | Viruses | 422 | 1.52e-113 | NTclustered | gi|1129880375|gb|KX170555.1| | 11099 | g7259 | i0 | 97.561 | 97.2094861660079 | 246 | 6 | 97 | 0 | 1 | 246 | 576 | 331 | Bovine viral diarrhea virus 1 isolate V078 NS4B gene, partial cds | blastn | 24594 | 422 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 13152066 | 13152066 | PRJNA358009_P_NODE_9511_length_185_cov_6.404412_g9442_i0 | PRJNA358009 | 9511 | 185 | 6.404412 | 11.8481622 | Pestivirus bovis | 3052619 | Viruses | Viruses | 298 | 1.84e-76 | NTclustered | gi|2127986424|gb|MW713361.1| | 11099 | g9442 | i0 | 96.154 | 72.8216216216216 | 182 | 7 | 98 | 0 | 1 | 182 | 7684 | 7865 | Bovine viral diarrhea virus 1 strain BoAEC1190, partial genome | blastn | 13472 | 298 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 13826482 | 13826482 | PRJNA358009_P_NODE_8911_length_189_cov_2.964286_g8842_i0 | PRJNA358009 | 8911 | 189 | 2.964286 | 5.60250054 | Pestivirus | 11095 | Viruses | Viruses | 287 | 4.08e-73 | NTclustered | gi|646290880|gb|KJ620017.1| | 11099 | g8842 | i0 | 97.605 | 89.4074074074074 | 167 | 4 | 88 | 0 | 21 | 187 | 11033 | 10867 | Bovine viral diarrhea virus 1 isolate IBSP4ncp polyprotein gene, complete cds | blastn | 16898 | 287 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 15100868 | 15100868 | PRJNA358009_P_NODE_9592_length_185_cov_2.544118_g9523_i0 | PRJNA358009 | 9592 | 185 | 2.544118 | 4.7066183 | Pestivirus | 11095 | Viruses | Viruses | 279 | 6.66e-71 | NTclustered | gi|1761026086|gb|MK675069.1| | 11099 | g9523 | i0 | 94.944 | 95.7891891891892 | 178 | 9 | 96 | 0 | 1 | 178 | 695 | 518 | Bovine viral diarrhea virus 1 strain 194-TC/17 glycoprotein E2 gene, partial cds | blastn | 17721 | 279 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 18924428 | 18924428 | PRJNA358009_P_NODE_1715_length_339_cov_4.793103_g1653_i0 | PRJNA358009 | 1715 | 339 | 4.793103 | 16.24861917 | Pestivirus | 11095 | Viruses | Viruses | 191 | 6.499999999999998e-44 | NTclustered | gi|1129879727|gb|KX170231.1| | 11099 | g1653 | i0 | 96.522 | 59.9085545722714 | 115 | 4 | 62 | 0 | 218 | 332 | 551 | 665 | Bovine viral diarrhea virus 1 isolate V020 Erns gene, partial cds | blastn | 20309 | 191 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20199089 | 20199089 | PRJNA358009_P_NODE_3656_length_327_cov_2.521583_g3593_i0 | PRJNA358009 | 3656 | 327 | 2.521583 | 8.24557641 | Pestivirus | 11095 | Viruses | Viruses | 178 | 4.86e-40 | NTclustered | gi|800924330|gb|KP941590.1| | 11099 | g3593 | i0 | 98.99 | 59.2660550458716 | 99 | 1 | 60 | 0 | 227 | 325 | 11004 | 11102 | Bovine viral diarrhea virus 1 strain USMARC-55924 polyprotein gene, complete cds | blastn | 19380 | 178 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20799757 | 20799757 | PRJNA358009_P_NODE_17037_length_158_cov_3.706422_g16968_i0 | PRJNA358009 | 17037 | 158 | 3.706422 | 5.85614676 | Pestivirus bovis | 3052619 | Viruses | Viruses | 255 | 9.27e-64 | NTclustered | gi|2625903273|gb|ON676187.1| | 11099 | g16968 | i0 | 96.732 | 96.7025316455696 | 153 | 5 | 97 | 0 | 3 | 155 | 11299 | 11451 | Bovine viral diarrhea virus 1 strain Chilgok, complete genome | blastn | 15279 | 255 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 20799831 | 20799831 | PRJNA358009_P_NODE_6517_length_326_cov_3.945848_g6454_i0 | PRJNA358009 | 6517 | 326 | 3.945848 | 12.86346448 | Pestivirus bovis | 3052619 | Viruses | Viruses | 152 | 2.94e-32 | NTclustered | gi|2419860348|dbj|LC727645.1| | 11099 | g6454 | i0 | 94.059 | 45.0460122699387 | 101 | 5 | 59 | 1 | 227 | 326 | 1492 | 1592 | Bovine viral diarrhea virus 1 Tokachi-13 RNA, nearly complete genome | blastn | 14685 | 152 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 22749778 | 22749778 | PRJNA358009_P_NODE_13878_length_165_cov_3.000000_g13809_i0 | PRJNA358009 | 13878 | 165 | 3 | 4.95 | Pestivirus | 11095 | Viruses | Viruses | 296 | 5.77e-76 | NTclustered | gi|1151064267|gb|KY040393.1| | 11099 | g13809 | i0 | 100 | 96.7515151515152 | 160 | 0 | 97 | 0 | 6 | 165 | 96 | 255 | Bovine viral diarrhea virus 1 strain 124/11 5' UTR | blastn | 15964 | 296 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Flasuviricetes | Amarillovirales | Flaviviridae | Pestivirus | Pestivirus bovis | ||
| 23350354 | 23350354 | PRJNA358009_P_NODE_9139_length_188_cov_1.467626_g9070_i0 | PRJNA358009 | 9139 | 188 | 1.467626 | 2.75913688 | Gammacarmovirus melonis | 3048200 | Viruses | Viruses | 318 | 1.44e-82 | NTclustered | gi|1108560304|gb|KY124136.1| | 11987 | g9070 | i0 | 98.343 | 6.73936170212766 | 181 | 3 | 96 | 0 | 8 | 188 | 3058 | 3238 | Melon necrotic spot virus strain MNSV/USA/MD/2012, complete genome | blastn | 1267 | 318 | 1 | Viruses | Orthornavirae | Kitrinoviricota | Tolucaviricetes | Tolivirales | Tombusviridae | Gammacarmovirus | Gammacarmovirus melonis |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;