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contig_metadata

11 rows where bioproject = "PRJNA358009", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 11 ✖

tax_kingdom 1

  • Pseudomonadati · 11 ✖

bioproject 1

  • PRJNA358009 · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
398353 398353 PRJNA358009_P_NODE_4441_length_327_cov_2.133094_g4378_i0 PRJNA358009 4441 327 2.133094 6.97521738 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 55.1 4.13e-6   NR HEY8278984.1 3034175 g4378 i0 71.9 0.293577981651376 32 9 29.4 0 96 1 75 106 HEY8278984.1 hypothetical protein [Bdellovibrionota bacterium] diamond 96 55.1 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
398396 398396 PRJNA358009_P_NODE_781_length_413_cov_1.854396_g723_i0 PRJNA358009 781 413 1.854396 7.65865548 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 268 3.62e-67   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g723 i0 96.319 64.4963680387409 163 6 68 0 1 163 1293155 1292993 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 26637 268 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
9326399 9326399 PRJNA358009_P_NODE_3268_length_327_cov_2.762590_g3205_i0 PRJNA358009 3268 327 2.76259 9.0336693 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 182 3.76e-41   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g3205 i0 99.01 42.7737003058104 101 1 59 0 227 327 1292651 1292751 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 13987 182 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
10001131 10001131 PRJNA358009_P_NODE_14388_length_164_cov_3.878261_g14319_i0 PRJNA358009 14388 164 3.878261 6.36034804 Bdellovibrio 958 Bacteria Bacteria 161 2.1799999999999997e-35   NTclustered gi|2800924434|gb|CP168967.1| 959 g14319 i0 93.519 58.9390243902439 108 7 66 0 1 108 784724 784831 Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome blastn 9666 161 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
12551522 12551522 PRJNA358009_P_NODE_2470_length_327_cov_3.848921_g2407_i0 PRJNA358009 2470 327 3.848921 12.58597167 Peredibacter 263370 Bacteria Bacteria 182 3.76e-41   NTclustered gi|2631252187|gb|CP139487.1| 28202 g2407 i0 100 39.8103975535168 98 0 61 0 230 327 512026 511929 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 13018 182 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
21474673 21474673 PRJNA358009_P_NODE_2877_length_327_cov_3.151079_g2814_i0 PRJNA358009 2877 327 3.151079 10.30402833 Bacteriovorax 146784 Bacteria Bacteria 163 1.3599999999999998e-35   NTclustered gi|1700689994|gb|CP030035.1| 960 g2814 i0 96 1.8348623853211 100 4 31 0 228 327 1661877 1661976 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 600 163 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
22749930 22749930 PRJNA358009_P_NODE_9938_length_183_cov_2.074627_g9869_i0 PRJNA358009 9938 183 2.074627 3.79656741 Bacteriovorax 146784 Bacteria Bacteria 339 1.07e-88   NTclustered gi|1700689994|gb|CP030035.1| 960 g9869 i0 100 16.9726775956284 183 0 100 0 1 183 1661777 1661595 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 3106 339 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
23350306 23350306 PRJNA358009_P_NODE_5339_length_327_cov_1.787770_g5276_i0 PRJNA358009 5339 327 1.78777 5.8460079 Peredibacter starrii 28202 Bacteria Bacteria 174 6.29e-39   NTclustered gi|2631252187|gb|CP139487.1| 28202 g5276 i0 98 2.63914373088685 100 2 59 0 228 327 512217 512316 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 863 174 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
24624414 24624414 PRJNA358009_P_NODE_14420_length_164_cov_3.182609_g14351_i0 PRJNA358009 14420 164 3.182609 5.21947876 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 259 7.52e-65   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g14351 i0 95.652 86.1951219512195 161 7 98 0 1 161 3446739 3446899 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 14136 259 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
28527817 28527817 PRJNA358009_P_NODE_6327_length_327_cov_1.467626_g6264_i0 PRJNA358009 6327 327 1.467626 4.79913702 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 69.3 2.44e-12   NR MEK6553941.1 3034175 g6264 i0 39.4 0.954128440366973 104 29 95.4 1 3 314 8 77 MEK6553941.1 cytochrome B subunit [Bdellovibrionota bacterium] diamond 312 69.3 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31134304 31134304 PRJNA358009_P_NODE_6735_length_326_cov_1.700361_g6672_i0 PRJNA358009 6735 326 1.700361 5.54317686 Pseudomonadati 3379134 Bacteria Bacteria 108 3.59e-25   NR QQG37209.1 349221 g6672 i0 54.6 3.97546012269939 108 15 99.4 1 3 326 226 299 QQG37209.1 MAG: GTP cyclohydrolase II [Micavibrio aeruginosavorus] diamond 1296 108 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;