RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

21 rows where bioproject = "PRJNA358009" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 21 ✖

bioproject 1

  • PRJNA358009 · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1672991 1672991 PRJNA358009_P_NODE_3762_length_327_cov_2.453237_g3699_i0 PRJNA358009 3762 327 2.453237 8.02208499 Pestivirus bovis 3052619 Viruses Viruses 156 2.28e-33   NTclustered gi|2625903273|gb|ON676187.1| 11099 g3699 i0 96.774 50.2935779816514 93 3 28 0 228 320 8582 8490 Bovine viral diarrhea virus 1 strain Chilgok, complete genome blastn 16446 156 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
2348448 2348448 PRJNA358009_P_NODE_8302_length_201_cov_3.427632_g8233_i0 PRJNA358009 8302 201 3.427632 6.88954032 Pestivirus 11095 Viruses Viruses 255 1.24e-63   NTclustered gi|2088281168|dbj|LC648387.1| 11099 g8233 i0 92.655 88.0248756218905 177 13 88 0 18 194 467 291 Bovine viral diarrhea virus 1 BVDV/Rikubetsu/1283/14 gene for polyprotein, partial cds blastn 17693 255 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
4225372 4225372 PRJNA358009_P_NODE_12524_length_169_cov_1.700000_g12455_i0 PRJNA358009 12524 169 1.7 2.873 Pestivirus bovis 3052619 Viruses Viruses 276 7.69e-70   NTclustered gi|1350888790|gb|KY852366.1| 11099 g12455 i0 96.951 96.9230769230769 164 5 97 0 6 169 34 197 Bovine viral diarrhea virus 1 isolate S1118 E2 glycoprotein gene, partial cds blastn 16380 276 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
8051608 8051608 PRJNA358009_P_NODE_7327_length_253_cov_5.544118_g7259_i0 PRJNA358009 7327 253 5.544118 14.02661854 Pestivirus bovis 3052619 Viruses Viruses 422 1.52e-113   NTclustered gi|1129880375|gb|KX170555.1| 11099 g7259 i0 97.561 97.2094861660079 246 6 97 0 1 246 576 331 Bovine viral diarrhea virus 1 isolate V078 NS4B gene, partial cds blastn 24594 422 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
10602123 10602123 PRJNA358009_P_NODE_9729_length_184_cov_3.059259_g9660_i0 PRJNA358009 9729 184 3.059259 5.62903656 Chemarfal virus 260 3063286 Viruses Viruses 300 5.08e-77   NTclustered gi|2626079958|gb|OR270550.1| 3063286 g9660 i0 97.191 0.967391304347826 178 4 96 1 8 184 980 803 MAG: Chemarfal virus 260 isolate ML188 genomic sequence blastn 178 300 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales     Chemarfal virus 260
13152066 13152066 PRJNA358009_P_NODE_9511_length_185_cov_6.404412_g9442_i0 PRJNA358009 9511 185 6.404412 11.8481622 Pestivirus bovis 3052619 Viruses Viruses 298 1.84e-76   NTclustered gi|2127986424|gb|MW713361.1| 11099 g9442 i0 96.154 72.8216216216216 182 7 98 0 1 182 7684 7865 Bovine viral diarrhea virus 1 strain BoAEC1190, partial genome blastn 13472 298 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
13826482 13826482 PRJNA358009_P_NODE_8911_length_189_cov_2.964286_g8842_i0 PRJNA358009 8911 189 2.964286 5.60250054 Pestivirus 11095 Viruses Viruses 287 4.08e-73   NTclustered gi|646290880|gb|KJ620017.1| 11099 g8842 i0 97.605 89.4074074074074 167 4 88 0 21 187 11033 10867 Bovine viral diarrhea virus 1 isolate IBSP4ncp polyprotein gene, complete cds blastn 16898 287 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
15100868 15100868 PRJNA358009_P_NODE_9592_length_185_cov_2.544118_g9523_i0 PRJNA358009 9592 185 2.544118 4.7066183 Pestivirus 11095 Viruses Viruses 279 6.66e-71   NTclustered gi|1761026086|gb|MK675069.1| 11099 g9523 i0 94.944 95.7891891891892 178 9 96 0 1 178 695 518 Bovine viral diarrhea virus 1 strain 194-TC/17 glycoprotein E2 gene, partial cds blastn 17721 279 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
16975563 16975563 PRJNA358009_P_NODE_12714_length_168_cov_2.117647_g12645_i0 PRJNA358009 12714 168 2.117647 3.55764696 Chemarfal virus 260 3063286 Viruses Viruses 243 7.8e-60   NTclustered gi|2626079958|gb|OR270550.1| 3063286 g12645 i0 93.789 0.958333333333333 161 10 96 0 8 168 626 466 MAG: Chemarfal virus 260 isolate ML188 genomic sequence blastn 161 243 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales     Chemarfal virus 260
18924428 18924428 PRJNA358009_P_NODE_1715_length_339_cov_4.793103_g1653_i0 PRJNA358009 1715 339 4.793103 16.24861917 Pestivirus 11095 Viruses Viruses 191 6.499999999999998e-44   NTclustered gi|1129879727|gb|KX170231.1| 11099 g1653 i0 96.522 59.9085545722714 115 4 62 0 218 332 551 665 Bovine viral diarrhea virus 1 isolate V020 Erns gene, partial cds blastn 20309 191 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
20199089 20199089 PRJNA358009_P_NODE_3656_length_327_cov_2.521583_g3593_i0 PRJNA358009 3656 327 2.521583 8.24557641 Pestivirus 11095 Viruses Viruses 178 4.86e-40   NTclustered gi|800924330|gb|KP941590.1| 11099 g3593 i0 98.99 59.2660550458716 99 1 60 0 227 325 11004 11102 Bovine viral diarrhea virus 1 strain USMARC-55924 polyprotein gene, complete cds blastn 19380 178 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
20799757 20799757 PRJNA358009_P_NODE_17037_length_158_cov_3.706422_g16968_i0 PRJNA358009 17037 158 3.706422 5.85614676 Pestivirus bovis 3052619 Viruses Viruses 255 9.27e-64   NTclustered gi|2625903273|gb|ON676187.1| 11099 g16968 i0 96.732 96.7025316455696 153 5 97 0 3 155 11299 11451 Bovine viral diarrhea virus 1 strain Chilgok, complete genome blastn 15279 255 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
20799831 20799831 PRJNA358009_P_NODE_6517_length_326_cov_3.945848_g6454_i0 PRJNA358009 6517 326 3.945848 12.86346448 Pestivirus bovis 3052619 Viruses Viruses 152 2.94e-32   NTclustered gi|2419860348|dbj|LC727645.1| 11099 g6454 i0 94.059 45.0460122699387 101 5 59 1 227 326 1492 1592 Bovine viral diarrhea virus 1 Tokachi-13 RNA, nearly complete genome blastn 14685 152 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
22074914 22074914 PRJNA358009_P_NODE_8238_length_203_cov_7.746753_g8169_i0 PRJNA358009 8238 203 7.746753 15.72590859 Sopapen virus 3131614 Viruses Viruses 91.6 3.75e-14   NTclustered gi|2717322942|gb|PP173915.1| 3131614 g8169 i0 93.443 1.54187192118227 61 4 30 0 143 203 527 467 MAG: Sopapen virus isolate SP1A_k141_131186 genomic sequence blastn 313 91.6 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Sopapen virus
22749778 22749778 PRJNA358009_P_NODE_13878_length_165_cov_3.000000_g13809_i0 PRJNA358009 13878 165 3 4.95 Pestivirus 11095 Viruses Viruses 296 5.77e-76   NTclustered gi|1151064267|gb|KY040393.1| 11099 g13809 i0 100 96.7515151515152 160 0 97 0 6 165 96 255 Bovine viral diarrhea virus 1 strain 124/11 5' UTR blastn 15964 296 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
23350354 23350354 PRJNA358009_P_NODE_9139_length_188_cov_1.467626_g9070_i0 PRJNA358009 9139 188 1.467626 2.75913688 Gammacarmovirus melonis 3048200 Viruses Viruses 318 1.44e-82   NTclustered gi|1108560304|gb|KY124136.1| 11987 g9070 i0 98.343 6.73936170212766 181 3 96 0 8 188 3058 3238 Melon necrotic spot virus strain MNSV/USA/MD/2012, complete genome blastn 1267 318 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae Gammacarmovirus Gammacarmovirus melonis
26853563 26853563 PRJNA358009_P_NODE_15321_length_163_cov_0.894737_g15252_i0 PRJNA358009 15321 163 0.894737 1.45842131 Malassezia restricta associated totivirus 1 3048757 Viruses Viruses 95.1 4.31e-21   NR CAI9858976.1 3048757 g15252 i0 92.5 0.975460122699387 53 4 97.5 0 161 3 207 259 CAI9858976.1 polyprotein, partial [Malassezia restricta associated totivirus 1] diamond 159 95.1 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Orthototiviridae Totivirus Malassezia restricta associated totivirus 1
28274890 28274890 PRJNA358009_P_NODE_8966_length_189_cov_1.457143_g8897_i0 PRJNA358009 8966 189 1.457143 2.75400027 Totivirus sp. 2776824 Viruses Viruses 120 6.429999999999999e-31   NR QOQ37361.1 2776824 g8897 i0 88.5 0.968253968253968 61 7 96.8 0 184 2 216 276 QOQ37361.1 capsid protein, partial [Totivirus sp.] diamond 183 120 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Orthototiviridae Totivirus Totivirus sp.
28843162 28843162 PRJNA358009_P_NODE_3888_length_327_cov_2.384892_g3825_i0 PRJNA358009 3888 327 2.384892 7.79859684 Grapevine wood holobiome associated narna-like virus 8 3398665 Viruses Viruses 43.9 0.0298   NR XOD45351.1 3398665 g3825 i0 60 0.275229357798165 30 12 27.5 0 229 318 196 225 XOD45351.1 HP1 [Grapevine wood holobiome associated narna-like virus 8] diamond 90 43.9 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae   Grapevine wood holobiome associated narna-like virus 8
31497119 31497119 PRJNA358009_P_NODE_9336_length_186_cov_9.189781_g9267_i0 PRJNA358009 9336 186 9.189781 17.09299266 Grapevine wood holobiome associated narna-like virus 8 3398665 Viruses Viruses 41.6 0.0417   NR XOD45351.1 3398665 g9267 i0 42.1 0.919354838709677 57 30 87.1 1 19 180 73 129 XOD45351.1 HP1 [Grapevine wood holobiome associated narna-like virus 8] diamond 171 41.6 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes Wolframvirales Narnaviridae   Grapevine wood holobiome associated narna-like virus 8
32066272 32066272 PRJNA358009_P_NODE_2138_length_328_cov_3.025090_g2075_i0 PRJNA358009 2138 328 3.02509 9.9222952 Hangzhou mitovirus 7 2905242 Viruses Viruses 57.4 7.26e-7   NR UHK03006.1 2905242 g2075 i0 33.9 1.02439024390244 112 43 98.8 3 2 325 64 148 UHK03006.1 MAG: RNA-dependent RNA polymerase [Hangzhou mitovirus 7] diamond 336 57.4 1 Viruses   Orthornavirae Lenarviricota Howeltoviricetes Cryppavirales Mitoviridae Mitovirus Hangzhou mitovirus 7

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;