RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA358009", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA358009 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13151847 13151847 PRJNA358009_P_NODE_10891_length_177_cov_2.812500_g10822_i0 PRJNA358009 10891 177 2.8125 4.978125 uncultured delta proteobacterium 34034 Bacteria Bacteria 230 6.439999999999999e-56   NTclustered gi|2874254016|emb|OY970341.1| 34034 g10822 i0 94.079 177.361581920904 152 7 85 1 9 158 593170 593019 MAG: uncultured delta proteobacterium isolate MFD01231.bin.c.2 genome assembly, chromosome: 1 blastn 31393 230 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
21474743 21474743 PRJNA358009_P_NODE_7677_length_227_cov_10.988764_g7608_i0 PRJNA358009 7677 227 10.988764 24.94449428 root 1 Root_unresolved Root_unresolved 399 6.269999999999998e-107   NTclustered gi|306491434|gb|GU179675.1| 34034 g7608 i0 99.099 99.5462555066079 222 2 98 0 5 226 556 777 Uncultured delta proteobacterium clone D009012J13 16S ribosomal RNA gene, partial sequence blastn 22597 399 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
24024775 24024775 PRJNA358009_P_NODE_4559_length_327_cov_2.082734_g4496_i0 PRJNA358009 4559 327 2.082734 6.81054018 Bacteria 2 Bacteria Bacteria 174 6.29e-39   NTclustered gi|451917354|gb|KC451218.1| 34034 g4496 i0 100 43.6269113149847 94 0 49 0 228 321 189 96 Uncultured delta proteobacterium clone RLBp2592 16S ribosomal RNA gene, partial sequence blastn 14266 174 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;