RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA358009" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA358009 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2348345 2348345 PRJNA358009_P_NODE_17302_length_157_cov_2.425926_g17233_i0 PRJNA358009 17302 157 2.425926 3.80870382 Trebouxia 13786 Plants Plants 265 1.53e-66   NTclustered gi|922575247|gb|JQ921009.1| 13788 g17233 i0 98.658 120.292993630573 149 2 95 0 2 150 1736 1588 Trebouxia impressa strain UTEX 893 23S large subunit ribosomal RNA gene, partial sequence; and putative LAGLIDADG homing endonuclease gene, complete cds; chloroplast blastn 18886 265 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia impressa
3623602 3623602 PRJNA358009_P_NODE_12203_length_170_cov_4.380165_g12134_i0 PRJNA358009 12203 170 4.380165 7.4462805 Chlorophyta 3041 Plants Plants 263 6.03e-66   NTclustered gi|1799637080|gb|MN968346.1| 29647 g12134 i0 99.315 85.8588235294118 146 0 85 1 1 145 1048 903 Stichococcus sp. strain USMFM_Antarctica 2 small subunit ribosomal RNA gene, partial sequence blastn 14596 263 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus sp.
4900934 4900934 PRJNA358009_P_NODE_304_length_575_cov_3.296578_g264_i0 PRJNA358009 304 575 3.296578 18.9553235 Eukaryota 2759 Plants Plants 281 6.65e-71   NTclustered gi|1714003650|gb|MN243923.1| 3079 g264 i0 100 51.4382608695652 152 0 61 0 228 379 506 657 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 29577 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
7450847 7450847 PRJNA358009_P_NODE_1326_length_348_cov_2.926421_g1265_i0 PRJNA358009 1326 348 2.926421 10.18394508 Trebouxiophyceae 75966 Plants Plants 150 1.1399999999999999e-31   NTclustered gi|336508|gb|M36158.1|CHLCPG 63676 g1265 i0 95.699 38.0775862068966 93 4 27 0 8 100 160 252 C.ellipsoidea chloroplast 23S ribosomal RNA gene, complete sequence blastn 13251 150 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
24624544 24624544 PRJNA358009_P_NODE_5880_length_327_cov_1.611511_g5817_i0 PRJNA358009 5880 327 1.611511 5.26964097 Parachlorella kessleri 3074 Plants Plants 159 1.76e-34   NTclustered gi|254798615|ref|NC_012978.1| 3074 g5817 i0 96.842 30.3822629969419 95 3 29 0 6 100 77787 77693 Parachlorella kessleri chloroplast, complete genome blastn 9935 159 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Parachlorella Parachlorella kessleri
27313452 27313452 PRJNA358009_P_NODE_10303_length_180_cov_7.015267_g10234_i0 PRJNA358009 10303 180 7.015267 12.6274806 Eukaryota 2759 Plants Plants 106 7.06e-25   NR XP_011399604.1 3075 g10234 i0 78.9 6.63333333333333 57 12 95 0 4 174 1790 1846 XP_011399604.1 Pre-mRNA-processing-splicing factor 8 [Auxenochlorella protothecoides] diamond 1194 107 0.990654205607477 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;