RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA358009", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA358009 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1672813 1672813 PRJNA358009_P_NODE_11102_length_176_cov_2.228346_g11033_i0 PRJNA358009 11102 176 2.228346 3.92188896 Caryotricha minuta 1004043 SAR_Eukaryotes SAR_Eukaryotes 145 2.38e-30   NTclustered gi|759083508|gb|KM222125.1| 1004043 g11033 i0 85.926 27.2556818181818 135 19 77 0 42 176 1076 1210 Caryotricha minuta voucher LWW07112802 large subunit ribosomal RNA gene, partial sequence blastn 4797 145 1 Eukaryota Sar   Ciliophora Spirotrichea Kiitrichida Kiitrichidae Caryotricha Caryotricha minuta
8725619 8725619 PRJNA358009_P_NODE_16567_length_160_cov_5.333333_g16498_i0 PRJNA358009 16567 160 5.333333 8.5333328 Euplotes 5935 SAR_Eukaryotes SAR_Eukaryotes 267 4.35e-67   NTclustered gi|6980030|gb|AF223571.1|AF223571 5940 g16498 i0 98.675 87.1875 151 1 94 1 4 153 1014 864 Euplotes aediculatus internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13950 267 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Euplotes Euplotes aediculatus
17650571 17650571 PRJNA358009_P_NODE_17574_length_155_cov_6.433962_g17505_i0 PRJNA358009 17574 155 6.433962 9.9726411 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 263 5.41e-66   NTclustered gi|1802599795|gb|MT001204.1| 41631 g17505 i0 98.658 95.6903225806452 149 0 95 2 9 155 336 484 Colpoda sp. strain HFCC836 small subunit ribosomal RNA gene, partial sequence blastn 14832 263 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
24624331 24624331 PRJNA358009_P_NODE_10480_length_179_cov_5.292308_g10411_i0 PRJNA358009 10480 179 5.292308 9.47323132 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 315 1.75e-81   NTclustered gi|2651357791|gb|PP174306.1| 41631 g10411 i0 100 26.8324022346369 170 0 95 0 4 173 3431 3262 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4803 315 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;