RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA358009", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA358009 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2948767 2948767 PRJNA358009_P_NODE_12963_length_167_cov_1.584746_g12894_i0 PRJNA358009 12963 167 1.584746 2.64652582 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 104 3.81e-18   NTclustered gi|657012566|gb|KF302620.1| 2850 g12894 i0 86.458 0.574850299401198 96 11 56 2 71 164 20 115 Phaeodactylum tricornutum clone C821 hypothetical protein mRNA, complete cds blastn 96 104 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
5501907 5501907 PRJNA358009_P_NODE_2845_length_327_cov_3.183453_g2782_i0 PRJNA358009 2845 327 3.183453 10.40989131 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 62.1 5.11e-5   NTclustered gi|1819718724|gb|MN956530.1| 2850 g2782 i0 94.872 0.238532110091743 39 2 12 0 41 79 3575 3537 Phaeodactylum tricornutum strain ICE-H mitochondrion, complete genome blastn 78 62.1 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;