RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA358009", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA358009 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10001119 10001119 PRJNA358009_P_NODE_12788_length_167_cov_6.881356_g12719_i0 PRJNA358009 12788 167 6.881356 11.49186452 Ignavibacterium 795750 Bacteria Bacteria 226 7.799999999999999e-55   NTclustered gi|470490116|ref|NR_076968.1| 591197 g12719 i0 91.617 116.520958083832 167 9 98 3 1 164 1704 1868 Ignavibacterium album strain Mat9-16 23S ribosomal RNA gene, complete sequence blastn 19459 226 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium album
18924424 18924424 PRJNA358009_P_NODE_16795_length_159_cov_4.336364_g16726_i0 PRJNA358009 16795 159 4.336364 6.89481876 Ignavibacterium 795750 Bacteria Bacteria 193 7.43e-45   NTclustered gi|470490116|ref|NR_076968.1| 591197 g16726 i0 89.61 171.811320754717 154 12 96 4 1 152 2430 2279 Ignavibacterium album strain Mat9-16 23S ribosomal RNA gene, complete sequence blastn 27318 193 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium album
31117227 31117227 PRJNA358009_P_NODE_17475_length_156_cov_3.158879_g17406_i0 PRJNA358009 17475 156 3.158879 4.92785124 Ignavibacteria bacterium 2053306 Bacteria Bacteria 55.1 4.94e-7   NR MBM4179770.1 2053306 g17406 i0 61 0.788461538461538 41 16 78.8 0 155 33 244 284 MBM4179770.1 hypothetical protein [Ignavibacteria bacterium] diamond 123 55.1 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;