RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA358009", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA358009 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10001138 10001138 PRJNA358009_P_NODE_15588_length_162_cov_1.805310_g15519_i0 PRJNA358009 15588 162 1.80531 2.9246022 Gemmatimonas 173479 Bacteria Bacteria 263 5.72e-66   NTclustered gi|470475286|ref|NR_076270.1| 173480 g15519 i0 96.273 25.1111111111111 161 5 99 1 2 162 2248 2089 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 4068 263 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
10602076 10602076 PRJNA358009_P_NODE_5909_length_327_cov_1.604317_g5846_i0 PRJNA358009 5909 327 1.604317 5.24611659 Longimicrobiales bacterium 2910168 Bacteria Bacteria 75 6.56e-9   NTclustered gi|2893356045|emb|OZ220468.1| 2910168 g5846 i0 95.652 0.342507645259939 46 2 14 0 257 302 2252672 2252717 MAG: Longimicrobiales bacterium isolate ddfa3c06-a013-4680-9539-8883dc2ec397 genome assembly, chromosome: 1 blastn 112 75 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
26933766 26933766 PRJNA358009_P_NODE_3722_length_327_cov_2.482014_g3659_i0 PRJNA358009 3722 327 2.482014 8.11618578 Pseudomonadati 3379134 Bacteria Bacteria 60.5 5.51e-8   NR MSR01127.1 2026742 g3659 i0 75 1.14678899082569 32 8 29.4 0 98 3 247 278 MSR01127.1 class C beta-lactamase-related serine hydrolase [Gemmatimonadota bacterium] diamond 375 60.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;