RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA356682" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA356682 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2347855 2347855 PRJNA356682_P_NODE_45322_length_238_cov_8.406061_g44631_i0 PRJNA356682 45322 238 8.406061 20.00642518 Vermamoeba 1260114 Tubulinea other_Eukaryota 429 8.45e-116   NTclustered gi|909719645|gb|KT185625.1| 5778 g44631 i0 99.16 3 238 2 100 0 1 238 5343 5106 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 714 429 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5500972 5500972 PRJNA356682_P_NODE_19185_length_328_cov_2.972549_g18494_i0 PRJNA356682 19185 328 2.972549 9.74996072 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 241 6.14e-59   NTclustered gi|292559443|ref|NC_013986.1| 5778 g18494 i0 80.303 2.48780487804878 330 55 99 9 1 327 25591 25913 Hartmannella vermiformis mitochondrion, complete genome blastn 816 241 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8051178 8051178 PRJNA356682_P_NODE_43307_length_242_cov_2.952663_g42616_i0 PRJNA356682 43307 242 2.952663 7.14544446 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 448 2.3799999999999995e-121   NTclustered gi|300078496|gb|GU001158.1| 5778 g42616 i0 100 95.7685950413223 242 0 100 0 1 242 2264 2505 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23176 448 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10000695 10000695 PRJNA356682_P_NODE_46848_length_226_cov_2.169935_g46157_i0 PRJNA356682 46848 226 2.169935 4.9040531 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 412 8.01e-111   NTclustered gi|909719645|gb|KT185625.1| 5778 g46157 i0 99.558 43.6725663716814 226 1 100 0 1 226 3642 3867 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 9870 412 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20799111 20799111 PRJNA356682_P_NODE_31557_length_265_cov_1.729167_g30866_i0 PRJNA356682 31557 265 1.729167 4.58229255 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 342 1.2799999999999999e-89   NTclustered gi|292559443|ref|NC_013986.1| 5778 g30866 i0 90.152 1.94716981132075 264 25 99 1 1 264 26683 26945 Hartmannella vermiformis mitochondrion, complete genome blastn 516 342 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22749021 22749021 PRJNA356682_P_NODE_18178_length_336_cov_2.110266_g17487_i0 PRJNA356682 18178 336 2.110266 7.09049376 Tubulinea 555369 Tubulinea other_Eukaryota 616 8.96e-172   NTclustered gi|2463802139|gb|OQ678078.1| 5778 g17487 i0 99.702 99.9940476190476 336 1 100 0 1 336 14 349 Vermamoeba vermiformis isolate IQ5E small subunit ribosomal RNA gene, partial sequence blastn 33598 616 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
25298209 25298209 PRJNA356682_P_NODE_10400_length_433_cov_11.025000_g9710_i0 PRJNA356682 10400 433 11.025 47.73825 Saccamoeba 136463 Tubulinea other_Eukaryota 604 2.559999999999999e-168   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g9710 i0 91.818 97.1478060046189 440 26 100 7 1 433 1214 1650 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 42065 604 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;