RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA356682", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 4 ✖

tax_phylum 1

  • Thermoproteota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA356682 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6775155 6775155 PRJNA356682_P_NODE_28706_length_276_cov_3.443350_g28015_i0 PRJNA356682 28706 276 3.44335 9.503646 uncultured crenarchaeote 29281 Archaea Archaea 455 1.66e-123   NTclustered gi|42557759|emb|AJ627422.1| 29281 g28015 i0 96.377 90.6992753623188 276 10 100 0 1 276 41481 41756 Uncultured crenarchaeote genomic fragment 54d9 blastn 25033 455 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
12551048 12551048 PRJNA356682_P_NODE_45870_length_234_cov_2.142857_g45179_i0 PRJNA356682 45870 234 2.142857 5.01428538 Thermoproteati 1783275 Archaea Archaea 322 1.45e-83   NTclustered gi|42557759|emb|AJ627422.1| 29281 g45179 i0 91.453 22.6837606837607 234 20 100 0 1 234 41048 41281 Uncultured crenarchaeote genomic fragment 54d9 blastn 5308 322 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
16374989 16374989 PRJNA356682_P_NODE_45493_length_237_cov_2.646341_g44802_i0 PRJNA356682 45493 237 2.646341 6.27182817 Archaea 2157 Archaea Archaea 416 6.5499999999999985e-112   NTclustered gi|42557759|emb|AJ627422.1| 29281 g44802 i0 98.312 24.0126582278481 237 4 100 0 1 237 40916 41152 Uncultured crenarchaeote genomic fragment 54d9 blastn 5691 416 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
24024314 24024314 PRJNA356682_P_NODE_7319_length_519_cov_2.500000_g6631_i0 PRJNA356682 7319 519 2.5 12.975 Archaea 2157 Archaea Archaea 931 0   NTclustered gi|42557759|emb|AJ627422.1| 29281 g6631 i0 99.037 94.6531791907514 519 5 100 0 1 519 41883 42401 Uncultured crenarchaeote genomic fragment 54d9 blastn 49125 931 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;