RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA356682" and tax_phylum = "Ignavibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA356682 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10000522 10000522 PRJNA356682_P_NODE_31088_length_267_cov_1.530928_g30397_i0 PRJNA356682 31088 267 1.530928 4.08757776 Pseudomonadati 3379134 Bacteria Bacteria 246 1.0399999999999999e-60   NTclustered gi|1938788434|gb|CP054181.1| 2053306 g30397 i0 83.395 91.565543071161 271 39 100 6 1 267 1603168 1603436 Ignavibacteria bacterium isolate H1_BAC2 chromosome blastn 24448 246 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
31623429 31623429 PRJNA356682_P_NODE_43376_length_242_cov_1.822485_g42685_i0 PRJNA356682 43376 242 1.822485 4.4104137 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 99.4 4.27e-22   NR HOJ37647.1 2049428 g42685 i0 51.3 0.991735537190083 80 39 99.2 0 242 3 401 480 HOJ37647.1 translational GTPase TypA [Ignavibacteriales bacterium] diamond 240 99.4 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;