RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA356682" and tax_phylum = "Blastocladiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA356682 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1671920 1671920 PRJNA356682_P_NODE_12722_length_394_cov_2.872274_g12032_i0 PRJNA356682 12722 394 2.872274 11.31675956 Paraphysoderma sedebokerense 1500003 Fungi Fungi 237 9.7e-58   NTclustered gi|1866582656|gb|MT730831.1| 1500003 g12032 i0 81.57 69.0482233502538 293 48 73 5 1 289 3751 4041 Paraphysoderma sedebokerense isolate JEL0821 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 27205 237 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
28071065 28071065 PRJNA356682_P_NODE_38005_length_249_cov_0.875000_g37314_i0 PRJNA356682 38005 249 0.875 2.17875 root 1 Root_unresolved Root_unresolved 106 5.02e-25   NR KAI9139939.1 1500003 g37314 i0 65.4 5.85542168674699 81 28 97.6 0 5 247 267 347 KAI9139939.1 Cys/Met metabolism PLP-dependent enzyme-domain-containing protein [Paraphysoderma sedebokerense] diamond 1458 107 0.990654205607477 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;