RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA356682", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

  • Bacillati · 6 ✖

bioproject 1

  • PRJNA356682 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9325677 9325677 PRJNA356682_P_NODE_31628_length_265_cov_1.531250_g30937_i0 PRJNA356682 31628 265 1.53125 4.0578125 Armatimonadetes bacterium Uphvl-Ar2 2004468 Bacteria Bacteria 363 9.849999999999999e-96   NTclustered gi|1199101103|gb|CP021424.1| 2004468 g30937 i0 91.386 192.237735849057 267 19 100 4 1 265 2201615 2201879 Armatimonadetes bacterium Uphvl-Ar2 genome blastn 50943 363 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium Uphvl-Ar2
20799268 20799268 PRJNA356682_P_NODE_38017_length_249_cov_0.875000_g37326_i0 PRJNA356682 38017 249 0.875 2.17875 Chthonomonadales bacterium 2282151 Bacteria Bacteria 115 1.1300000000000002e-27   NR HSV75011.1 2282151 g37326 i0 74.4 1.97590361445783 82 21 98.8 0 248 3 47 128 HSV75011.1 efflux RND transporter periplasmic adaptor subunit [Chthonomonadales bacterium] diamond 492 115 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales     Chthonomonadales bacterium
29474517 29474517 PRJNA356682_P_NODE_40790_length_245_cov_1.616279_g40099_i0 PRJNA356682 40790 245 1.616279 3.95988355 Armatimonadia bacterium 2663015 Bacteria Bacteria 50.4 6.35e-5   NR MEN6400861.1 2663015 g40099 i0 50 1.0530612244898 86 38 99.2 4 3 245 1 86 MEN6400861.1 hypothetical protein [Armatimonadia bacterium] diamond 258 50.4 1 Bacteria   Bacillati Armatimonadota Armatimonadia       Armatimonadia bacterium
30580136 30580136 PRJNA356682_P_NODE_6953_length_534_cov_1.281996_g6266_i0 PRJNA356682 6953 534 1.281996 6.84585864 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 48.1 0.00496   NR CAA9248784.1 157466 g6266 i0 37.9 0.696629213483146 124 63 62.4 3 14 346 52 174 CAA9248784.1 3-deoxy-manno-octulosonate cytidylyltransferase, partial [uncultured Armatimonadetes bacterium] diamond 372 48.1 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
32446286 32446286 PRJNA356682_P_NODE_7899_length_499_cov_1.237089_g7210_i0 PRJNA356682 7899 499 1.237089 6.17307411 Armatimonadota bacterium 2033014 Bacteria Bacteria 147 1.52e-42   NR MDO8683953.1 2033014 g7210 i0 61.4 0.607214428857715 101 39 60.7 0 497 195 4 104 MDO8683953.1 hypothetical protein [Armatimonadota bacterium] diamond 303 147 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32572825 32572825 PRJNA356682_P_NODE_36059_length_251_cov_0.865169_g35368_i0 PRJNA356682 36059 251 0.865169 2.17157419 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 42.7 0.0267   NR HLJ54819.1 2739509 g35368 i0 34.1 0.9800796812749 82 51 98 1 250 5 59 137 HLJ54819.1 DUF1992 domain-containing protein [Chthonomonadaceae bacterium] diamond 246 42.7 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;