RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA356682", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA356682 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16974917 16974917 PRJNA356682_P_NODE_27214_length_283_cov_1.466667_g26523_i0 PRJNA356682 27214 283 1.466667 4.15066761 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 152 4.1e-42   NR PAA76497.1 282301 g26523 i0 75.8 1.93992932862191 91 22 96.5 0 3 275 200 290 PAA76497.1 hypothetical protein BOX15_Mlig020636g3, partial [Macrostomum lignano] diamond 549 152 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
22074255 22074255 PRJNA356682_P_NODE_34718_length_254_cov_2.823204_g34027_i0 PRJNA356682 34718 254 2.823204 7.17093816 Bdelloura candida 46766 Platyhelminthes Platyhelminthes 100 8.12e-17   NTclustered gi|28273266|gb|AY157154.1| 46766 g34027 i0 87.356 2.53937007874016 87 11 34 0 1 87 1614 1700 Bdelloura candida 28S large subunit ribosomal RNA gene, partial sequence blastn 645 100 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Bdellouridae Bdelloura Bdelloura candida

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;