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contig_metadata

20 rows where bioproject = "PRJNA356682", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 20 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 20 ✖

bioproject 1

  • PRJNA356682 · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
397466 397466 PRJNA356682_P_NODE_22521_length_306_cov_3.763948_g21830_i0 PRJNA356682 22521 306 3.763948 11.51768088 Metarhabditis rainai 2735107 Nematoda Nematoda 566 8.239999999999998e-157   NTclustered gi|158821902|gb|EU195966.1| 2735107 g21830 i0 100 100.813725490196 306 0 100 0 1 306 1228 1533 Metarhabditis rainai strain DF5091 28S ribosomal RNA gene, partial sequence blastn 30849 566 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Metarhabditis Metarhabditis rainai
1072278 1072278 PRJNA356682_P_NODE_26861_length_284_cov_3.734597_g26170_i0 PRJNA356682 26861 284 3.734597 10.60625548 Lobocriconema 619195 Nematoda Nematoda 193 1.48e-44   NTclustered gi|1720103777|gb|MK546405.1| 2600406 g26170 i0 79.381 98.6302816901408 291 47 99 13 1 282 956 670 Lobocriconema iranense isolate topotype pop. 2ASKO120f7.2 large subunit ribosomal RNA gene, partial sequence blastn 28011 193 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Criconematidae Lobocriconema Lobocriconema iranense
2347479 2347479 PRJNA356682_P_NODE_16622_length_350_cov_1.667870_g15931_i0 PRJNA356682 16622 350 1.66787 5.837545 Metazoa 33208 Nematoda Nematoda 641 1.5399999999999996e-179   NTclustered gi|158821895|gb|EU195959.1| 479134 g15931 i0 99.714 84.0342857142857 350 1 100 0 1 350 606 955 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 29412 641 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
2948330 2948330 PRJNA356682_P_NODE_35623_length_251_cov_2.595506_g34932_i0 PRJNA356682 35623 251 2.595506 6.51472006 Pelodera strongyloides 35557 Nematoda Nematoda 459 1.1499999999999996e-124   NTclustered gi|158821913|gb|EU195977.1| 35557 g34932 i0 99.602 39.3067729083665 251 1 100 0 1 251 2095 1845 Pelodera strongyloides strain DF5022 28S ribosomal RNA gene, partial sequence blastn 9866 459 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Pelodera Pelodera strongyloides
4224716 4224716 PRJNA356682_P_NODE_26504_length_286_cov_1.446009_g25813_i0 PRJNA356682 26504 286 1.446009 4.13558574 Cylicocyclus nassatus 53992 Nematoda Nematoda 109 2.26e-25   NR CAJ0600087.1 53992 g25813 i0 71.2 0.765734265734266 73 18 73.4 1 73 282 144 216 CAJ0600087.1 unnamed protein product [Cylicocyclus nassatus] diamond 219 109 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
5500779 5500779 PRJNA356682_P_NODE_10405_length_433_cov_7.158333_g9715_i0 PRJNA356682 10405 433 7.158333 30.99558189 Aporcelinus abeokutaensis 3085674 Nematoda Nematoda 763 0   NTclustered gi|2136552101|gb|OL457701.1| 3085674 g9715 i0 98.608 99.7667436489607 431 6 99 0 3 433 9 439 Aporcelinus abeokutaensis isolate MR 1 large subunit ribosomal RNA gene, partial sequence blastn 43199 763 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Aporcelaimidae Aporcelinus Aporcelinus abeokutaensis
5501040 5501040 PRJNA356682_P_NODE_22305_length_308_cov_1.255319_g21614_i0 PRJNA356682 22305 308 1.255319 3.86638252 Pristionchus sp. 10 RS5133 452805 Nematoda Nematoda 220 7.45e-53   NTclustered gi|150982251|gb|EF634714.1| 452805 g21614 i0 80.769 41.9058441558442 286 51 92 4 5 288 303 20 Pristionchus sp. 10 RS5133 large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 12907 220 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 10 RS5133
7450266 7450266 PRJNA356682_P_NODE_32606_length_261_cov_2.776596_g31915_i0 PRJNA356682 32606 261 2.776596 7.24691556 Xiphinema 46002 Nematoda Nematoda 198 2.89e-46   NTclustered gi|32527557|gb|AY210845.1| 70223 g31915 i0 81.25 28.0459770114943 272 27 100 11 1 261 3989 3731 Xiphinema rivesi 28S ribosomal RNA gene, partial sequence blastn 7320 200 0.99 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Xiphinema Xiphinema rivesi
10601725 10601725 PRJNA356682_P_NODE_47209_length_214_cov_9.319149_g46518_i0 PRJNA356682 47209 214 9.319149 19.94297886 Panagrolaimus sp. 3 GVDU-2019 2590353 Nematoda Nematoda 374 3.539999999999999e-99   NTclustered gi|1689836159|gb|MN082330.1| 2590353 g46518 i0 98.578 100.205607476636 211 3 99 0 1 211 560 770 Panagrolaimus sp. 3 GVDU-2019 small subunit ribosomal RNA gene, partial sequence blastn 21444 374 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. 3 GVDU-2019
11275388 11275388 PRJNA356682_P_NODE_18629_length_332_cov_7.756757_g17938_i0 PRJNA356682 18629 332 7.756757 25.75243324 Xiphinema 46002 Nematoda Nematoda 449 9.49e-122   NTclustered gi|32527557|gb|AY210845.1| 70223 g17938 i0 93.182 15.1506024096386 308 17 92 3 29 332 2145 2452 Xiphinema rivesi 28S ribosomal RNA gene, partial sequence blastn 5030 449 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Xiphinema Xiphinema rivesi
11876614 11876614 PRJNA356682_P_NODE_45990_length_232_cov_15.685535_g45299_i0 PRJNA356682 45990 232 15.685535 36.3904412 Pelodera strongyloides 35557 Nematoda Nematoda 425 1.0599999999999999e-114   NTclustered gi|148332475|gb|U13932.2|PSU13932 35558 g45299 i0 100 4.16379310344828 230 0 99 0 1 230 1263 1492 Pelodera strongyloides dermatitica DF5022 18S ribosomal RNA gene, partial sequence blastn 966 425 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Pelodera Pelodera strongyloides
13825519 13825519 PRJNA356682_P_NODE_15471_length_360_cov_9.250871_g14781_i0 PRJNA356682 15471 360 9.250871 33.3031356 Xiphinema 46002 Nematoda Nematoda 555 2.1299999999999994e-153   NTclustered gi|32527557|gb|AY210845.1| 70223 g14781 i0 94.444 132.986111111111 360 20 100 0 1 360 2452 2811 Xiphinema rivesi 28S ribosomal RNA gene, partial sequence blastn 47875 555 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Longidoridae Xiphinema Xiphinema rivesi
15100411 15100411 PRJNA356682_P_NODE_9192_length_461_cov_3.144330_g8503_i0 PRJNA356682 9192 461 3.14433 14.4953613 Pelodera 31239 Nematoda Nematoda 846 0   NTclustered gi|158821913|gb|EU195977.1| 35557 g8503 i0 99.783 103.522776572668 461 1 100 0 1 461 1416 1876 Pelodera strongyloides strain DF5022 28S ribosomal RNA gene, partial sequence blastn 47724 846 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Pelodera Pelodera strongyloides
19523430 19523430 PRJNA356682_P_NODE_30936_length_267_cov_5.613402_g30245_i0 PRJNA356682 30936 267 5.613402 14.98778334 Panagrolaimus sp. ES6 591446 Nematoda Nematoda 460 3.4299999999999996e-125   NTclustered gi|221327465|gb|FJ590996.1| 591446 g30245 i0 100 42.0823970037453 249 0 93 0 19 267 585 337 Panagrolaimus sp. ES6 28S ribosomal RNA gene, partial sequence blastn 11236 460 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. ES6
20799072 20799072 PRJNA356682_P_NODE_30037_length_271_cov_1.570707_g29346_i0 PRJNA356682 30037 271 1.570707 4.25661597 Pelodera strongyloides 35557 Nematoda Nematoda 496 9.55e-136   NTclustered gi|148332475|gb|U13932.2|PSU13932 35558 g29346 i0 99.632 25.9446494464945 272 0 100 1 1 271 460 189 Pelodera strongyloides dermatitica DF5022 18S ribosomal RNA gene, partial sequence blastn 7031 496 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Pelodera Pelodera strongyloides
22748919 22748919 PRJNA356682_P_NODE_11918_length_406_cov_5.459459_g11228_i0 PRJNA356682 11918 406 5.459459 22.16540354 Cephalobidae 29166 Nematoda Nematoda 723 0   NTclustered gi|166014127|gb|EU253570.1| 114851 g11228 i0 98.768 101.42118226601 406 5 100 0 1 406 1972 1567 Cephalobus cubaensis strain PS1197 28S large subunit ribosomal RNA gene, partial sequence blastn 41177 723 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Cephalobus Cephalobus cubaensis
23349894 23349894 PRJNA356682_P_NODE_45699_length_235_cov_3.055556_g45008_i0 PRJNA356682 45699 235 3.055556 7.1805566 Acrobeloides sp. DWF-1105 403126 Nematoda Nematoda 396 8.449999999999997e-106   NTclustered gi|114452028|gb|DQ903079.1| 403126 g45008 i0 97.817 80.0893617021277 229 3 97 1 9 235 540 312 Acrobeloides sp. DWF-1105 28S ribosomal RNA gene, partial sequence blastn 18821 396 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Acrobeloides Acrobeloides sp. DWF-1105
24023782 24023782 PRJNA356682_P_NODE_12659_length_395_cov_3.357143_g11969_i0 PRJNA356682 12659 395 3.357143 13.26071485 Cervidellus 114856 Nematoda Nematoda 719 0   NTclustered gi|1689836100|gb|MN082271.1| 2590294 g11969 i0 99.494 100 395 2 100 0 1 395 32 426 Cervidellus sp. 2 GVDU-2019 small subunit ribosomal RNA gene, partial sequence blastn 39500 719 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Cervidellus Cervidellus sp. 2 GVDU-2019
25298707 25298707 PRJNA356682_P_NODE_47080_length_219_cov_4.027397_g46389_i0 PRJNA356682 47080 219 4.027397 8.81999943 Rhabditida 6236 Nematoda Nematoda 392 1.01e-104   NTclustered gi|482677747|gb|KC522713.1| 55785 g46389 i0 99.083 97.1735159817352 218 2 99 0 2 219 1549 1332 Panagrolaimus sp. PS1159 small subunit ribosomal RNA gene, complete sequence blastn 21281 392 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. PS1159
26885171 26885171 PRJNA356682_P_NODE_40801_length_245_cov_1.569767_g40110_i0 PRJNA356682 40801 245 1.569767 3.84592915 Caenorhabditis bovis 2654633 Nematoda Nematoda 110 7.54e-26   NR CAB3409357.1 2654633 g40110 i0 87.7 1.45714285714286 57 7 69.8 0 73 243 338 394 CAB3409357.1 unnamed protein product [Caenorhabditis bovis] diamond 357 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;