RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA356682", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_phylum 1

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA356682 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4224417 4224417 PRJNA356682_P_NODE_11304_length_416_cov_7.510204_g10614_i0 PRJNA356682 11304 416 7.510204 31.24244864 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 65.8 5.14e-6   NTclustered gi|2274983416|gb|OP038912.1| 5725 g10614 i0 97.368 0.0913461538461538 38 1 9 0 104 141 2535 2572 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 38 65.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
10601568 10601568 PRJNA356682_P_NODE_40389_length_246_cov_0.890173_g39698_i0 PRJNA356682 40389 246 0.890173 2.18982558 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 89.8 1.69e-13   NTclustered gi|2794859752|ref|XM_067914169.1| 135588 g39698 i0 82.353 0.414634146341463 102 18 41 0 43 144 11368 11469 Histomonas meleagridis dynein heavy chain 10, axonemal-like (GO595_000138), partial mRNA blastn 102 89.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27801512 27801512 PRJNA356682_P_NODE_42824_length_243_cov_0.905882_g42133_i0 PRJNA356682 42824 243 0.905882 2.20129326 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 43.9 0.0127   NR KAJ5077268.1 1746090 g42133 i0 40.3 0.765432098765432 62 32 76.5 1 58 243 134 190 KAJ5077268.1 phosphatidylinositol-4-phosphate 5-kinase [Anaeramoeba ignava] diamond 186 43.9 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;