RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA356682", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA356682 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4900413 4900413 PRJNA356682_P_NODE_44164_length_241_cov_29.904762_g43473_i0 PRJNA356682 44164 241 29.904762 72.07047642 Rhodothermus 29548 Bacteria Bacteria 185 2.0499999999999998e-42   NTclustered gi|470485382|ref|NR_076698.1| 29549 g43473 i0 80.672 181.95020746888 238 46 99 0 3 240 2947 2710 Rhodothermus marinus strain DSM 4252 23S ribosomal RNA gene, complete sequence blastn 43850 185 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
10601566 10601566 PRJNA356682_P_NODE_40229_length_246_cov_0.890173_g39538_i0 PRJNA356682 40229 246 0.890173 2.18982558 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 278 3.37e-70   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g39538 i0 88.186 575.073170731707 237 23 96 5 12 246 1309430 1309197 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 141468 278 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
30106326 30106326 PRJNA356682_P_NODE_15132_length_364_cov_3.457045_g14442_i0 PRJNA356682 15132 364 3.457045 12.5836438 Rhodothermaceae bacterium 2026787 Bacteria Bacteria 137 3.97e-39   NR MFA8344306.1 2026787 g14442 i0 63.6 3.48626373626374 107 39 88.2 0 43 363 1 107 MFA8344306.1 molecular chaperone Tir [Rhodothermaceae bacterium] diamond 1269 137 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;