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contig_metadata

19 rows where bioproject = "PRJNA356682", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 19 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 19 ✖

bioproject 1

  • PRJNA356682 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4225134 4225134 PRJNA356682_P_NODE_44084_length_242_cov_0.911243_g43393_i0 PRJNA356682 44084 242 0.911243 2.20520806 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 158 1.26e-44   NR MBK8645673.1 2026742 g43393 i0 100 0.991735537190083 80 0 99.2 0 2 241 278 357 MBK8645673.1 GAF domain-containing protein [Gemmatimonadota bacterium] diamond 240 158 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
6774799 6774799 PRJNA356682_P_NODE_11626_length_411_cov_3.878698_g10936_i0 PRJNA356682 11626 411 3.878698 15.94144878 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 101 3.56e-22   NR HEU5042096.1 2448054 g10936 i0 57.3 1.08029197080292 96 41 70.1 0 379 92 296 391 HEU5042096.1 HD domain-containing protein [Gemmatimonadales bacterium] diamond 444 101 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
11876339 11876339 PRJNA356682_P_NODE_33930_length_257_cov_1.673913_g33239_i0 PRJNA356682 33930 257 1.673913 4.30195641 FCB group 1783270 Bacteria Bacteria 156 5.78e-44   NR MDH4347931.1 2026742 g33239 i0 88.2 39.6536964980545 85 10 99.2 0 1 255 316 400 MDH4347931.1 NADP-dependent isocitrate dehydrogenase [Gemmatimonadota bacterium] diamond 10191 157 0.993630573248408 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
20198252 20198252 PRJNA356682_P_NODE_2116_length_1046_cov_4.805755_g1575_i0 PRJNA356682 2116 1046 4.8057550000000004 50.2681973 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 281 8.819999999999999e-89   NR MBK7714774.1 2026742 g1575 i0 50.2 0.926386233269598 323 123 92.6 5 970 2 1 285 MBK7714774.1 50S ribosomal protein L1 [Gemmatimonadota bacterium] diamond 969 281 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
22074325 22074325 PRJNA356682_P_NODE_37278_length_249_cov_3.051136_g36587_i0 PRJNA356682 37278 249 3.051136 7.59732864 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 361 3.3e-95   NTclustered gi|226088597|dbj|AP009153.1| 379066 g36587 i0 93.089 6.93574297188755 246 17 99 0 1 246 2062050 2062295 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 1727 361 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
23349998 23349998 PRJNA356682_P_NODE_799_length_1825_cov_34.620434_g486_i0 PRJNA356682 799 1825 34.620434 631.8229205 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 2743 0   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g486 i0 93.829 216.384109589041 1831 100 100 13 1 1825 2076527 2074704 Gemmatimonas phototrophica strain AP64, complete genome blastn 394901 2743 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
26821834 26821834 PRJNA356682_P_NODE_38021_length_249_cov_0.875000_g37330_i0 PRJNA356682 38021 249 0.875 2.17875 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 119 4.2e-31   NR HEX6670529.1 2448054 g37330 i0 88.6 2.53012048192771 70 8 84.3 0 249 40 197 266 HEX6670529.1 tetratricopeptide repeat protein [Gemmatimonadales bacterium] diamond 630 119 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
26853559 26853559 PRJNA356682_P_NODE_44521_length_241_cov_0.916667_g43830_i0 PRJNA356682 44521 241 0.916667 2.20916747 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 137 8.259999999999999e-37   NR HOX20604.1 2448054 g43830 i0 94.8 1.92946058091286 77 4 95.9 0 11 241 264 340 HOX20604.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Gemmatimonadales bacterium] diamond 465 137 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27391093 27391093 PRJNA356682_P_NODE_17403_length_342_cov_4.327138_g16712_i0 PRJNA356682 17403 342 4.327138 14.79881196 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 154 1.4499999999999998e-42   NR HEU5042096.1 2448054 g16712 i0 84.5 0.850877192982456 97 13 83.3 2 18 302 319 415 HEU5042096.1 HD domain-containing protein [Gemmatimonadales bacterium] diamond 291 154 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27454263 27454263 PRJNA356682_P_NODE_15683_length_358_cov_5.596491_g14993_i0 PRJNA356682 15683 358 5.596491 20.03543778 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 74.7 3.16e-15   NR HZB28403.1 2448054 g14993 i0 72.3 0.393854748603352 47 13 39.4 0 99 239 4 50 HZB28403.1 hypothetical protein [Gemmatimonadales bacterium] diamond 141 74.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28306569 28306569 PRJNA356682_P_NODE_26846_length_284_cov_5.497630_g26155_i0 PRJNA356682 26846 284 5.49763 15.6132692 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 74.3 1.93e-15   NR HZB28403.1 2448054 g26155 i0 70.8 0.507042253521127 48 14 50.7 0 93 236 2 49 HZB28403.1 hypothetical protein [Gemmatimonadales bacterium] diamond 144 74.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28338187 28338187 PRJNA356682_P_NODE_37166_length_250_cov_0.870056_g36475_i0 PRJNA356682 37166 250 0.870056 2.17514 Gemmatimonas sp. UBA7669 1946568 Bacteria Bacteria 150 1.8e-41   NR WP_343125840.1 1946568 g36475 i0 96.4 0.996 83 3 99.6 0 1 249 302 384 WP_343125840.1 RNA polymerase sigma factor [Gemmatimonas sp. UBA7669] diamond 249 150 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp. UBA7669
28969659 28969659 PRJNA356682_P_NODE_30128_length_271_cov_1.191919_g29437_i0 PRJNA356682 30128 271 1.191919 3.23010049 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 170 9.65e-47   NR HEX5075855.1 2026741 g29437 i0 89.9 2.95571955719557 89 9 98.5 0 268 2 414 502 HEX5075855.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Gemmatimonadaceae bacterium] diamond 801 170 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29159250 29159250 PRJNA356682_P_NODE_40189_length_246_cov_0.890173_g39498_i0 PRJNA356682 40189 246 0.890173 2.18982558 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 131 5.879999999999999e-35   NR MEX2582494.1 2026742 g39498 i0 79.3 1.97560975609756 82 17 100 0 1 246 218 299 MEX2582494.1 N-acetyl-gamma-glutamyl-phosphate reductase [Gemmatimonadota bacterium] diamond 486 131 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30313673 30313673 PRJNA356682_P_NODE_9692_length_449_cov_1.114362_g9002_i0 PRJNA356682 9692 449 1.114362 5.00348538 Pseudomonadati 3379134 Bacteria Bacteria 90.9 5.99e-18   NR HUL02172.1 2448054 g9002 i0 45.5 2.73273942093541 123 58 82.2 3 385 17 1771 1884 HUL02172.1 calcium-binding protein [Gemmatimonadales bacterium] diamond 1227 90.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31243851 31243851 PRJNA356682_P_NODE_40475_length_246_cov_0.890173_g39784_i0 PRJNA356682 40475 246 0.890173 2.18982558 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 169 1.67e-49   NR MBX9855000.1 2026741 g39784 i0 100 1 82 0 100 0 1 246 60 141 MBX9855000.1 diguanylate cyclase [Gemmatimonadaceae bacterium] diamond 246 169 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32097927 32097927 PRJNA356682_P_NODE_23638_length_300_cov_2.035242_g22947_i0 PRJNA356682 23638 300 2.035242 6.105726 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 91.3 4.67e-22   NR HZB28403.1 2448054 g22947 i0 79.6 0.49 49 10 49 0 214 68 4 52 HZB28403.1 hypothetical protein [Gemmatimonadales bacterium] diamond 147 91.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32446269 32446269 PRJNA356682_P_NODE_19579_length_325_cov_3.849206_g18888_i0 PRJNA356682 19579 325 3.849206 12.5099195 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 96.3 6.859999999999999e-24   NR HZB28403.1 2448054 g18888 i0 78.8 0.48 52 11 48 0 270 115 2 53 HZB28403.1 hypothetical protein [Gemmatimonadales bacterium] diamond 156 96.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32509611 32509611 PRJNA356682_P_NODE_39739_length_247_cov_0.885057_g39048_i0 PRJNA356682 39739 247 0.885057 2.18609079 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 46.6 0.00174   NR MDB4951000.1 2026742 g39048 i0 26.7 0.910931174089069 75 48 91.1 1 4 228 473 540 MDB4951000.1 proton-translocating NADH-quinone oxidoreductase, chain [Gemmatimonadota bacterium] diamond 225 46.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;