RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA352850", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA352850 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11274946 11274946 PRJNA352850_P_NODE_72009_length_264_cov_2.418605_g69176_i0 PRJNA352850 72009 264 2.418605 6.3851172 Chloroflexota 200795 Bacteria Bacteria 147 1.08e-30   NTclustered gi|2513924934|gb|CP126532.1| 2306968 g69176 i0 78.667 18.3901515151515 225 45 85 3 38 261 893923 893701 MAG: Ktedonobacterales bacterium isolate bin_006 chromosome, complete genome blastn 4855 148 0.993243243243243 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales     Ktedonobacterales bacterium
26916630 26916630 PRJNA352850_P_NODE_62382_length_291_cov_2.793388_g59549_i0 PRJNA352850 62382 291 2.793388 8.12875908 Chloroflexia bacterium 2448782 Bacteria Bacteria 94.7 5.24e-22   NR MBA2248255.1 2448782 g59549 i0 77.3 0.680412371134021 66 14 67 1 95 289 2 67 MBA2248255.1 HNH endonuclease [Chloroflexia bacterium] diamond 198 94.7 1 Bacteria   Bacillati Chloroflexota Chloroflexia       Chloroflexia bacterium
28053837 28053837 PRJNA352850_P_NODE_47625_length_353_cov_2.312500_g44792_i0 PRJNA352850 47625 353 2.3125 8.163125 Chloroflexota bacterium 2026724 Bacteria Bacteria 181 2.77e-54   NR HET7771449.1 2026724 g44792 i0 75.2 1.98866855524079 117 29 99.4 0 1 351 150 266 HET7771449.1 DUF58 domain-containing protein [Chloroflexota bacterium] diamond 702 181 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;