RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA352850", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA352850 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13148414 13148414 PRJNA352850_P_NODE_14111_length_838_cov_4.353612_g11542_i0 PRJNA352850 14111 838 4.353612 36.48326856 Armatimonadota bacterium 2033014 Bacteria Bacteria 375 2.03e-126   NR MDQ2731611.1 2033014 g11542 i0 59.9 1.97255369928401 277 111 99.2 0 838 8 86 362 MDQ2731611.1 glycoside hydrolase family 27 protein [Armatimonadota bacterium] diamond 1653 375 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
26790088 26790088 PRJNA352850_P_NODE_38761_length_408_cov_2.805014_g35929_i0 PRJNA352850 38761 408 2.805014 11.44445712 Armatimonadota bacterium 2033014 Bacteria Bacteria 122 8.3e-30   NR MFQ6098154.1 2033014 g35929 i0 68 1.10294117647059 75 24 55.1 0 233 9 28 102 MFQ6098154.1 PKD domain-containing protein [Armatimonadota bacterium] diamond 450 122 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
27770013 27770013 PRJNA352850_P_NODE_10584_length_1037_cov_6.414980_g8253_i0 PRJNA352850 10584 1037 6.41498 66.5233426 Armatimonadota bacterium 2033014 Bacteria Bacteria 112 4.569999999999999e-23   NR MDQ2730579.1 2033014 g8253 i0 35.7 0.616200578592093 213 132 61.3 4 1036 401 460 668 MDQ2730579.1 hypothetical protein [Armatimonadota bacterium] diamond 639 112 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29821845 29821845 PRJNA352850_P_NODE_86371_length_230_cov_2.209945_g83538_i0 PRJNA352850 86371 230 2.209945 5.0828735 Armatimonadota bacterium 2033014 Bacteria Bacteria 144 1.13e-40   NR MDQ3812905.1 2033014 g83538 i0 93.4 6.86086956521739 76 5 99.1 0 228 1 125 200 MDQ3812905.1 sigma-70 family RNA polymerase sigma factor [Armatimonadota bacterium] diamond 1578 144 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;