RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA352850", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA352850 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4222235 4222235 PRJNA352850_P_NODE_19964_length_650_cov_6.128120_g17203_i0 PRJNA352850 19964 650 6.12812 39.83278 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 337 3.659999999999999e-112   NR MBC8002191.1 2026801 g17203 i0 75.2 7.86 214 51 98.8 1 2 643 220 431 MBC8002191.1 L-fuconate dehydratase [Verrucomicrobiales bacterium] diamond 5109 337 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
27990929 27990929 PRJNA352850_P_NODE_46825_length_357_cov_2.636364_g43992_i0 PRJNA352850 46825 357 2.636364 9.41181948 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 44.7 0.0142   NR MCH1506043.1 2026801 g43992 i0 39 0.991596638655462 59 32 47.1 2 349 182 78 135 MCH1506043.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 354 44.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
31592009 31592009 PRJNA352850_P_NODE_65536_length_281_cov_2.241379_g62703_i0 PRJNA352850 65536 281 2.241379 6.29827499 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 62.4 6.85e-10   NR MDP9291775.1 2026799 g62703 i0 75 0.875444839857651 40 10 42.7 0 281 162 76 115 MDP9291775.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 246 62.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;