RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA352850", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 5 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA352850 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5499347 5499347 PRJNA352850_P_NODE_44525_length_370_cov_1.990654_g41692_i0 PRJNA352850 44525 370 1.990654 7.3654198 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 667 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g41692 i0 99.189 116.721621621622 370 3 100 0 1 370 1251066 1250697 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 43187 667 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
14423631 14423631 PRJNA352850_P_NODE_16072_length_762_cov_3.093969_g13426_i0 PRJNA352850 16072 762 3.093969 23.57604378 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 1362 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g13426 i0 98.95 125.863517060367 762 7 100 1 1 762 1249854 1249094 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 95908 1362 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
14424069 14424069 PRJNA352850_P_NODE_29752_length_491_cov_4.402715_g26924_i0 PRJNA352850 29752 491 4.402715 21.61733065 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 902 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g26924 i0 99.796 116.423625254582 491 1 100 0 1 491 1251125 1251615 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 57164 902 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
20796271 20796271 PRJNA352850_P_NODE_16017_length_764_cov_2.689510_g13373_i0 PRJNA352850 16017 764 2.68951 20.5478564 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 1373 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g13373 i0 99.601 139.952879581152 752 3 98 0 13 764 1249889 1250640 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 106924 1373 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
30738220 30738220 PRJNA352850_P_NODE_58514_length_305_cov_3.246094_g55681_i0 PRJNA352850 58514 305 3.246094 9.9005867 Chlamydiales bacterium 2047757 Bacteria Bacteria 87.8 2.41e-18   NR MBN9377724.1 2047757 g55681 i0 47 0.983606557377049 100 51 96.4 2 304 11 184 283 MBN9377724.1 hypothetical protein [Chlamydiales bacterium] diamond 300 87.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;