RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA352850", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA352850 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8049032 8049032 PRJNA352850_P_NODE_46067_length_361_cov_4.987179_g43234_i0 PRJNA352850 46067 361 4.987179 18.00371619 root 1 Root_unresolved Root_unresolved 152 1.71e-44   NR XP_001307865.1 412133 g43234 i0 62.9 2.86703601108033 116 43 96.4 0 353 6 44 159 XP_001307865.1 GTP binding [Trichomonas vaginalis G3] diamond 1035 152 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
10599509 10599509 PRJNA352850_P_NODE_45009_length_367_cov_3.213836_g42176_i0 PRJNA352850 45009 367 3.213836 11.79477812 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 357 6.6e-94   NTclustered gi|2806468597|ref|XM_068493487.1| 1144522 g42176 i0 84.765 21.8964577656676 361 49 97 2 13 367 393 33 Tritrichomonas foetus Histone H2B (HTB1), partial mRNA blastn 8036 357 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;