RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA352850", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA352850 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
395185 395185 PRJNA352850_P_NODE_25441_length_547_cov_10.277108_g22622_i0 PRJNA352850 25441 547 10.277108 56.21578076 Ripella sp. 805 1217113 Discosea other_Eukaryota 857 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g22622 i0 95.404 99.5393053016453 544 16 99 9 8 547 1 539 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 54448 857 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
1669897 1669897 PRJNA352850_P_NODE_28182_length_510_cov_6.646421_g25356_i0 PRJNA352850 28182 510 6.646421 33.8967471 Ripella decalvata 2047822 Discosea other_Eukaryota 610 6.569999999999997e-170   NTclustered gi|1269228423|gb|MF683548.1| 2047822 g25356 i0 94.71 77.6196078431373 397 13 77 7 1 392 1165 1558 Ripella decalvata clone 26.2.2 18S ribosomal RNA gene, partial sequence blastn 39586 610 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
5498852 5498852 PRJNA352850_P_NODE_28325_length_508_cov_6.653595_g25499_i0 PRJNA352850 28325 508 6.653595 33.8002626 Ripella sp. 805 1217113 Discosea other_Eukaryota 850 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g25499 i0 96.857 102.092519685039 509 14 100 2 1 508 1044 537 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 51863 850 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
11873469 11873469 PRJNA352850_P_NODE_16950_length_732_cov_3.768668_g14276_i0 PRJNA352850 16950 732 3.768668 27.58664976 Cochliopodium spiniferum 313558 Discosea other_Eukaryota 739 0   NTclustered gi|330902897|gb|JF298273.1| 313558 g14276 i0 84.973 99.9945355191257 732 106 99 4 3 732 52 781 Cochliopodium spiniferum clone 5102 actin gene, partial cds blastn 73196 739 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium spiniferum
26853542 26853542 PRJNA352850_P_NODE_72861_length_263_cov_0.953271_g70028_i0 PRJNA352850 72861 263 0.953271 2.50710273 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 46.2 0.00273   NR XP_004348706.1 1257118 g70028 i0 40.8 1.11787072243346 49 29 55.9 0 239 93 338 386 XP_004348706.1 uncharacterized protein ACA1_126730 [Acanthamoeba castellanii str. Neff] diamond 294 46.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27422709 27422709 PRJNA352850_P_NODE_33903_length_448_cov_3.428571_g31073_i0 PRJNA352850 33903 448 3.428571 15.35999808 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 65.9 3.19e-9   NR XP_004339528.1 1257118 g31073 i0 37.1 0.703125 105 61 67 1 397 98 2745 2849 XP_004339528.1 HEAT repeat domain containing protein [Acanthamoeba castellanii str. Neff] diamond 315 65.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27895973 27895973 PRJNA352850_P_NODE_28805_length_502_cov_5.889625_g25979_i0 PRJNA352850 28805 502 5.889625 29.5659175 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 208 4.33e-61   NR XP_004358064.1 1257118 g25979 i0 70.3 0.884462151394422 148 43 87.8 1 17 457 431 578 XP_004358064.1 HEAT repeat containing protein, partial [Acanthamoeba castellanii str. Neff] diamond 444 208 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29853763 29853763 PRJNA352850_P_NODE_46271_length_360_cov_4.064309_g43438_i0 PRJNA352850 46271 360 4.064309 14.6315124 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 114 3.4200000000000003e-29   NR XP_004352065.1 1257118 g43438 i0 52.1 1.00833333333333 121 56 100 2 1 360 54 173 XP_004352065.1 ribosomal protein S7e, putative [Acanthamoeba castellanii str. Neff] diamond 363 114 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;