RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA352610" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA352610 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21472209 21472209 PRJNA352610_P_NODE_11877_length_345_cov_1.132353_g11816_i0 PRJNA352610 11877 345 1.132353 3.90661785 Verrucomicrobiota 74201 Bacteria Bacteria 505 2.08e-138   NTclustered gi|2874253952|emb|OY970277.1| 412056 g11816 i0 93.043 223.76231884058 345 24 100 0 1 345 2749927 2750271 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 blastn 77198 505 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
27154740 27154740 PRJNA352610_P_NODE_31262_length_242_cov_0.911243_g31201_i0 PRJNA352610 31262 242 0.911243 2.20520806 Rariglobus 2706524 Bacteria Bacteria 43.1 0.0222   NR HNC24174.1 2006848 g31201 i0 48.9 2.10743801652893 45 23 55.8 0 239 105 177 221 HNC24174.1 hypothetical protein [Opitutaceae bacterium] diamond 510 43.5 0.990804597701149 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
27864354 27864354 PRJNA352610_P_NODE_32065_length_241_cov_0.904762_g32004_i0 PRJNA352610 32065 241 0.904762 2.18047642 Opitutia bacterium 2026771 Bacteria Bacteria 43.1 0.0265   NR MBI5382792.1 2026771 g32004 i0 36.1 0.759336099585062 61 31 75.9 1 193 11 385 437 MBI5382792.1 DegQ family serine endoprotease [Opitutia bacterium] diamond 183 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
28590819 28590819 PRJNA352610_P_NODE_2567_length_618_cov_1.251376_g2507_i0 PRJNA352610 2567 618 1.251376 7.73350368 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 128 1.85e-30   NR HXI84029.1 2499141 g2507 i0 54.5 0.650485436893204 134 54 64.1 4 616 221 162 290 HXI84029.1 NF038122 family metalloprotease [Verrucomicrobiia bacterium] diamond 402 128 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29190700 29190700 PRJNA352610_P_NODE_28929_length_245_cov_1.389535_g28868_i0 PRJNA352610 28929 245 1.389535 3.40436075 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 90.5 5.63e-19   NR RME94189.1 2026799 g28868 i0 60.3 1.70204081632653 68 27 83.3 0 226 23 479 546 RME94189.1 MAG: beta-N-acetylglucosaminidase [Verrucomicrobiota bacterium] diamond 417 90.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30643356 30643356 PRJNA352610_P_NODE_8913_length_385_cov_1.176282_g8852_i0 PRJNA352610 8913 385 1.176282 4.5286857 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 70.1 1.61e-11   NR HEU6448320.1 2499141 g8852 i0 60.4 0.412987012987013 53 20 41.3 1 1 159 192 243 HEU6448320.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 159 70.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32477835 32477835 PRJNA352610_P_NODE_7839_length_404_cov_1.773414_g7778_i0 PRJNA352610 7839 404 1.773414 7.16459256 Roseibacillus persicicus 454148 Bacteria Bacteria 51.6 1.79e-4   NR WP_308988555.1 454148 g7778 i0 45.2 1.38118811881188 62 31 46 1 188 3 86 144 WP_308988555.1 family 16 glycoside hydrolase [Roseibacillus persicicus] diamond 558 51.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseibacillus Roseibacillus persicicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;