RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA352610" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA352610 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28464501 28464501 PRJNA352610_P_NODE_19026_length_287_cov_1.074766_g18965_i0 PRJNA352610 19026 287 1.074766 3.08457842 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.018   NR CEO96551.1 37360 g18965 i0 24.5 1.97560975609756 102 70 99.3 2 287 3 290 391 CEO96551.1 hypothetical protein PBRA_005160 [Plasmodiophora brassicae] diamond 567 44.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29853745 29853745 PRJNA352610_P_NODE_8671_length_389_cov_1.218354_g8610_i0 PRJNA352610 8671 389 1.218354 4.73939706 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 159 9.22e-44   NR CEO94321.1 37360 g8610 i0 55.5 1.94344473007712 128 57 98.7 0 387 4 344 471 CEO94321.1 hypothetical protein PBRA_000107 [Plasmodiophora brassicae] diamond 756 159 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;