RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA352610" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA352610 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30674965 30674965 PRJNA352610_P_NODE_15073_length_316_cov_0.950617_g15012_i0 PRJNA352610 15073 316 0.950617 3.00394972 Coelomomyces lativittatus 945690 Fungi Fungi 141 3.44e-39   NR KAJ1515117.1 945690 g15012 i0 68 0.977848101265823 103 33 97.8 0 311 3 38 140 KAJ1515117.1 40S ribosomal protein S4 [Coelomomyces lativittatus] diamond 309 141 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Coelomomycetaceae Coelomomyces Coelomomyces lativittatus
31893624 31893624 PRJNA352610_P_NODE_31217_length_242_cov_0.911243_g31156_i0 PRJNA352610 31217 242 0.911243 2.20520806 Eukaryota 2759 Fungi Fungi 95.9 2.2899999999999998e-23   NR KAI9189488.1 1313167 g31156 i0 57.7 8.1198347107438 71 30 88 0 240 28 10 80 KAI9189488.1 ubiquitin-like protein atg8 [Blastocladiella emersonii ATCC 22665] diamond 1965 96.7 0.991726990692865 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;