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contig_metadata

25 rows where bioproject = "PRJNA352610", tax_phylum = "Bacillota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 25 ✖

tax_phylum 1

  • Bacillota · 25 ✖

tax_kingdom 1

bioproject 1

  • PRJNA352610 · 25 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1668535 1668535 PRJNA352610_P_NODE_2502_length_622_cov_4.562842_g2443_i0 PRJNA352610 2502 622 4.562842 28.38087724 Clostridium perfringens 1502 Bacteria Bacteria 254 6.99e-83   NR MDJ8942385.1 1502 g2443 i0 80.5 0.742765273311897 154 30 74.3 0 487 26 42 195 MDJ8942385.1 hypothetical protein [Clostridium perfringens] diamond 462 254 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens
6771674 6771674 PRJNA352610_P_NODE_5806_length_452_cov_4.567282_g5745_i0 PRJNA352610 5806 452 4.567282 20.64411464 root 1 Root_unresolved Root_unresolved 187 3.07e-58   NR MRC56835.1 1428 g5745 i0 80 17.9601769911504 115 22 76.3 1 423 79 10 123 MRC56835.1 50S ribosomal protein L30e [Bacillus thuringiensis] diamond 8118 187 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis
16971296 16971296 PRJNA352610_P_NODE_27994_length_247_cov_0.885057_g27933_i0 PRJNA352610 27994 247 0.885057 2.18609079 Streptococcus sp. Marseille-Q6470 2972784 Bacteria Bacteria 374 4.189999999999998e-99   NTclustered gi|2306632708|emb|OX336385.1| 2972784 g27933 i0 93.927 2.98785425101215 247 15 100 0 1 247 231626 231380 Streptococcus sp. Marseille-Q6470 genome assembly, chromosome: contig00001 blastn 738 374 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. Marseille-Q6470
22747411 22747411 PRJNA352610_P_NODE_11558_length_349_cov_1.054348_g11497_i0 PRJNA352610 11558 349 1.054348 3.67967452 Bacteria 2 Bacteria Bacteria 617 2.59e-172   NTclustered gi|1214725545|gb|CP022247.1| 1282 g11497 i0 98.567 476.054441260745 349 5 100 0 1 349 1787665 1787317 Staphylococcus epidermidis strain AMT chromosome, complete genome blastn 166143 617 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis
23345735 23345735 PRJNA352610_P_NODE_239_length_1368_cov_2.465637_g226_i0 PRJNA352610 239 1368 2.465637 33.72991416 Clostridium perfringens 1502 Bacteria Bacteria 210 5.61e-61   NR MDJ8942383.1 1502 g226 i0 70.2 0.449561403508772 205 59 45 1 1051 437 74 276 MDJ8942383.1 hypothetical protein [Clostridium perfringens] diamond 615 210 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium perfringens
26599659 26599659 PRJNA352610_P_NODE_23261_length_261_cov_1.117021_g23200_i0 PRJNA352610 23261 261 1.117021 2.91542481 Parasporobacterium sp. 2740533 Bacteria Bacteria 85.9 1.44e-17   NR MCF0230466.1 2740533 g23200 i0 56.3 0.816091954022989 71 31 81.6 0 48 260 29 99 MCF0230466.1 asparaginase [Parasporobacterium sp.] diamond 213 85.9 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Parasporobacterium Parasporobacterium sp.
27707006 27707006 PRJNA352610_P_NODE_14564_length_320_cov_0.931174_g14503_i0 PRJNA352610 14564 320 0.931174 2.9797568 Ligilactobacillus sp. WC1T17 3158786 Bacteria Bacteria 44.3 0.0187   NR WP_225355186.1 3158786 g14503 i0 31 0.54375 58 40 54.4 0 205 32 19 76 WP_225355186.1 hypothetical protein [Ligilactobacillus sp. WC1T17] diamond 174 44.3 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus sp. WC1T17
28116964 28116964 PRJNA352610_P_NODE_29285_length_245_cov_0.895349_g29224_i0 PRJNA352610 29285 245 0.895349 2.19360505 Paenibacillus oceani 2772510 Bacteria Bacteria 43.1 0.0269   NR WP_190926862.1 2772510 g29224 i0 40.7 0.722448979591837 59 28 67.3 2 31 195 239 294 WP_190926862.1 ROK family transcriptional regulator [Paenibacillus oceani] diamond 177 43.1 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus oceani
28260340 28260340 PRJNA352610_P_NODE_10806_length_358_cov_1.350877_g10745_i0 PRJNA352610 10806 358 1.350877 4.83613966 root 1 Root_unresolved Root_unresolved 60.8 1.1e-9   NR MRA76214.1 1428 g10745 i0 66 0.837988826815642 50 14 40.2 2 2 145 12 60 MRA76214.1 hypothetical protein [Bacillus thuringiensis] diamond 300 61.2 0.993464052287582 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis
28748511 28748511 PRJNA352610_P_NODE_207_length_1414_cov_7.827740_g195_i0 PRJNA352610 207 1414 7.82774 110.6842436 Methylomusa anaerophila 1930071 Bacteria Bacteria 127 4.24e-28   NR WP_126308322.1 1930071 g195 i0 27.6 1.71004243281471 380 254 78.3 7 1234 128 40 409 WP_126308322.1 ammonium transporter [Methylomusa anaerophila] diamond 2418 127 1 Bacteria   Bacillati Bacillota Negativicutes Selenomonadales Sporomusaceae Methylomusa Methylomusa anaerophila
28969620 28969620 PRJNA352610_P_NODE_3148_length_570_cov_1.096579_g3087_i0 PRJNA352610 3148 570 1.096579 6.2505003 [Eubacterium] hominis 2764325 Bacteria Bacteria 47 0.0165   NR WP_187426296.1 2764325 g3087 i0 41.2 0.357894736842105 68 32 35.8 1 324 121 4 63 WP_187426296.1 Cof-type HAD-IIB family hydrolase [[Eubacterium] hominis] diamond 204 47 1 Bacteria   Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Amedibacillus [Eubacterium] hominis
29316888 29316888 PRJNA352610_P_NODE_7309_length_416_cov_0.877551_g7248_i0 PRJNA352610 7309 416 0.877551 3.65061216 Candidatus Mediterraneibacter quadrami 2838684 Bacteria Bacteria 44.7 0.0393   NR HJD42471.1 2838684 g7248 i0 22.1 1.07451923076923 149 93 90.9 3 1 378 102 250 HJD42471.1 site-specific integrase [Candidatus Mediterraneibacter quadrami] diamond 447 44.7 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Mediterraneibacter Candidatus Mediterraneibacter quadrami
29902533 29902533 PRJNA352610_P_NODE_7371_length_414_cov_2.563050_g7310_i0 PRJNA352610 7371 414 2.56305 10.611027 root 1 Root_unresolved Root_unresolved 205 5.41e-63   NR MRB67411.1 1428 g7310 i0 78.5 34.1884057971015 121 26 87.7 0 52 414 11 131 MRB67411.1 30S ribosomal protein S2 [Bacillus thuringiensis] diamond 14154 206 0.995145631067961 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis
30232739 30232739 PRJNA352610_P_NODE_21792_length_270_cov_0.923858_g21731_i0 PRJNA352610 21792 270 0.923858 2.4944166 Sporofaciens musculi 2681861 Bacteria Bacteria 42.7 0.0495   NR WP_159750977.1 2681861 g21731 i0 50 0.511111111111111 46 23 51.1 0 187 50 169 214 WP_159750977.1 MATE family efflux transporter [Sporofaciens musculi] diamond 138 42.7 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Sporofaciens Sporofaciens musculi
30264676 30264676 PRJNA352610_P_NODE_28432_length_246_cov_0.890173_g28371_i0 PRJNA352610 28432 246 0.890173 2.18982558 Halanaerobiales bacterium 2094029 Bacteria Bacteria 63.5 1.86e-9   NR MBS3812162.1 2094029 g28371 i0 50 0.585365853658537 48 24 58.5 0 70 213 1 48 MBS3812162.1 hypothetical protein [Halanaerobiales bacterium] diamond 144 63.5 1 Bacteria   Bacillati Bacillota Clostridia Halanaerobiales     Halanaerobiales bacterium
31275430 31275430 PRJNA352610_P_NODE_23895_length_257_cov_1.255435_g23834_i0 PRJNA352610 23895 257 1.255435 3.22646795 Enterococcus faecium 1352 Bacteria Bacteria 49.3 2.15e-4   NR WP_334412465.1 1352 g23834 i0 61 0.957198443579767 82 32 95.7 0 3 248 14 95 WP_334412465.1 hypothetical protein, partial [Enterococcus faecium] diamond 246 49.3 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium
31450934 31450934 PRJNA352610_P_NODE_23256_length_261_cov_1.148936_g23195_i0 PRJNA352610 23256 261 1.148936 2.99872296 Bacillales 1385 Bacteria Bacteria 108 1.02e-25   NR WP_069325903.1 44249 g23195 i0 64.7 10.7931034482759 85 27 94.3 1 248 3 118 202 WP_069325903.1 MULTISPECIES: NADH-dependent flavin oxidoreductase [Paenibacillus] diamond 2817 109 0.990825688073395 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus  
31545878 31545878 PRJNA352610_P_NODE_996_length_864_cov_1.902655_g952_i0 PRJNA352610 996 864 1.902655 16.4389392 Bacillota 1239 Bacteria Bacteria 95.9 2.01e-18   NR WP_007062230.1 217159 g952 i0 28.4 5.80555555555556 261 164 85.8 8 758 18 7 258 WP_007062230.1 ammonium transporter [Clostridium carboxidivorans] diamond 5016 95.9 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium carboxidivorans
31767041 31767041 PRJNA352610_P_NODE_27077_length_248_cov_0.880000_g27016_i0 PRJNA352610 27077 248 0.88 2.1824 Bacteria 2 Bacteria Bacteria 96.3 5.97e-21   NR WP_093230995.1 46223 g27016 i0 55.7 20.1411290322581 79 34 95.6 1 10 246 1024 1101 WP_093230995.1 non-ribosomal peptide synthetase [Thermoflavimicrobium dichotomicum] diamond 4995 96.3 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Thermoactinomycetaceae Thermoflavimicrobium Thermoflavimicrobium dichotomicum
31988490 31988490 PRJNA352610_P_NODE_9758_length_372_cov_1.571906_g9697_i0 PRJNA352610 9758 372 1.571906 5.84749032 root 1 Root_unresolved Root_unresolved 44.7 0.0262   NR WP_185358167.1 1640 g9697 i0 38.5 2.00806451612903 65 36 49.2 1 341 159 46 110 WP_185358167.1 ATP-binding cassette domain-containing protein [Listeria seeligeri] diamond 747 44.7 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Listeriaceae Listeria Listeria seeligeri
32066208 32066208 PRJNA352610_P_NODE_20698_length_276_cov_1.512315_g20637_i0 PRJNA352610 20698 276 1.512315 4.1739894 Halanaerobiales bacterium 2094029 Bacteria Bacteria 71.6 3.79e-12   NR MBS3812162.1 2094029 g20637 i0 50 0.91304347826087 84 41 90.2 1 24 272 765 848 MBS3812162.1 hypothetical protein [Halanaerobiales bacterium] diamond 252 71.6 1 Bacteria   Bacillati Bacillota Clostridia Halanaerobiales     Halanaerobiales bacterium
32382730 32382730 PRJNA352610_P_NODE_6299_length_439_cov_0.964481_g6238_i0 PRJNA352610 6299 439 0.964481 4.23407159 Oscillospiraceae bacterium 2485925 Bacteria Bacteria 45.4 0.0114   NR MCI8714955.1 2485925 g6238 i0 32.1 0.533029612756264 78 51 53.3 1 32 265 2 77 MCI8714955.1 GNAT family N-acetyltransferase [Oscillospiraceae bacterium] diamond 234 45.4 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium
32541169 32541169 PRJNA352610_P_NODE_28499_length_246_cov_0.890173_g28438_i0 PRJNA352610 28499 246 0.890173 2.18982558 Bacillota bacterium 1879010 Bacteria Bacteria 112 8.470000000000001e-27   NR MDP4145640.1 1879010 g28438 i0 77.6 2.42682926829268 67 15 81.7 0 245 45 119 185 MDP4145640.1 portal protein [Bacillota bacterium] diamond 597 112 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
32761411 32761411 PRJNA352610_P_NODE_21240_length_273_cov_1.240000_g21179_i0 PRJNA352610 21240 273 1.24 3.3852 Neobacillus cucumis 1740721 Bacteria Bacteria 147 4.98e-41   NR WP_378575475.1 1740721 g21179 i0 76.4 1.96703296703297 89 21 97.8 0 271 5 184 272 WP_378575475.1 elongation of very long chain fatty acids protein, partial [Neobacillus cucumis] diamond 537 147 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Neobacillus Neobacillus cucumis
32824447 32824447 PRJNA352610_P_NODE_29860_length_244_cov_0.900585_g29799_i0 PRJNA352610 29860 244 0.900585 2.1974274 Halanaerobiales bacterium 2094029 Bacteria Bacteria 124 7.6799999999999996e-31   NR MBS3812162.1 2094029 g29799 i0 70.9 0.971311475409836 79 23 97.1 0 237 1 299 377 MBS3812162.1 hypothetical protein [Halanaerobiales bacterium] diamond 237 124 1 Bacteria   Bacillati Bacillota Clostridia Halanaerobiales     Halanaerobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;