RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA352610", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA352610 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27200995 27200995 PRJNA352610_P_NODE_11222_length_353_cov_1.035714_g11161_i0 PRJNA352610 11222 353 1.035714 3.65607042 Desulfoferrobacter suflitae 2865782 Bacteria Bacteria 55.5 4.33e-6   NR MCK8604329.1 2865782 g11161 i0 56.8 0.739376770538244 44 18 37.4 1 141 10 37 79 MCK8604329.1 CAP domain-containing protein [Desulfoferrobacter suflitae] diamond 261 55.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Desulfoferrobacter Desulfoferrobacter suflitae
28590799 28590799 PRJNA352610_P_NODE_11647_length_348_cov_1.065455_g11586_i0 PRJNA352610 11647 348 1.065455 3.7077834 Desulfobacca sp. 2067990 Bacteria Bacteria 52.8 3.02e-5   NR MDD3580436.1 2067990 g11586 i0 46.9 0.422413793103448 49 21 42.2 1 348 202 227 270 MDD3580436.1 archaemetzincin [Desulfobacca sp.] diamond 147 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobaccia Desulfobaccales Desulfobaccaceae Desulfobacca Desulfobacca sp.
29285158 29285158 PRJNA352610_P_NODE_6869_length_426_cov_1.059490_g6808_i0 PRJNA352610 6869 426 1.05949 4.5134274 Candidatus Magnetoglobus multicellularis str. Araruama 890399 Bacteria Bacteria 89.4 1.55e-17   NR ETR73065.1 890399 g6808 i0 44 0.640845070422535 91 49 64.1 1 422 150 1546 1634 ETR73065.1 MAG: hypothetical protein OMM_01242 [Candidatus Magnetoglobus multicellularis str. Araruama] diamond 273 89.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Candidatus Magnetoglobus Candidatus Magnetoglobus multicellularis
30422712 30422712 PRJNA352610_P_NODE_1233_length_807_cov_1.521798_g1183_i0 PRJNA352610 1233 807 1.521798 12.28090986 Desulfobacterales bacterium 2044940 Bacteria Bacteria 50.1 6.57e-4   NR MDJ0856950.1 2044940 g1183 i0 29.2 0.394052044609665 106 71 39.4 1 710 393 16 117 MDJ0856950.1 heavy metal-binding domain-containing protein [Desulfobacterales bacterium] diamond 318 50.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
31275455 31275455 PRJNA352610_P_NODE_9895_length_370_cov_1.400673_g9834_i0 PRJNA352610 9895 370 1.400673 5.1824901 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 44.7 0.0262   NR MCP4745847.1 2049433 g9834 i0 38.5 0.632432432432432 78 37 55.9 3 50 256 167 242 MCP4745847.1 Fur family transcriptional regulator [Desulfobacteraceae bacterium] diamond 234 44.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
31861843 31861843 PRJNA352610_P_NODE_25057_length_251_cov_0.865169_g24996_i0 PRJNA352610 25057 251 0.865169 2.17157419 Bacteria 2 Bacteria Bacteria 46.6 0.00169   NR WP_279061019.1 35833 g24996 i0 41.3 1.31474103585657 46 27 55 0 239 102 165 210 WP_279061019.1 amidoligase family protein [Bilophila wadsworthia] diamond 330 46.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bilophila Bilophila wadsworthia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;