RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA352610", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA352610 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27169366 27169366 PRJNA352610_P_NODE_19102_length_286_cov_1.446009_g19041_i0 PRJNA352610 19102 286 1.446009 4.13558574 Nitrospirota bacterium 2026887 Bacteria Bacteria 62.4 6.11e-9   NR MBI5038891.1 2026887 g19041 i0 39.3 0.933566433566434 89 52 91.3 1 24 284 49 137 MBI5038891.1 hypothetical protein [Nitrospirota bacterium] diamond 267 62.4 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
29001521 29001521 PRJNA352610_P_NODE_28528_length_246_cov_0.890173_g28467_i0 PRJNA352610 28528 246 0.890173 2.18982558 Nitrospira sp. 70125 Bacteria Bacteria 91.7 6.35e-20   NR MCE3223402.1 70125 g28467 i0 97.9 0.573170731707317 47 1 57.3 0 105 245 1 47 MCE3223402.1 putative VacJ-like lipoprotein [Nitrospira sp.] diamond 141 91.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;