RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA352610", tax_kingdom = "Pseudomonadati" and tax_phylum = "Elusimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Elusimicrobiota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA352610 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28306514 28306514 PRJNA352610_P_NODE_20346_length_279_cov_0.883495_g20285_i0 PRJNA352610 20346 279 0.883495 2.46495105 Elusimicrobia bacterium CG1_ 1805133 Bacteria Bacteria 57 4.31e-7   NR OIO12074.1 1805133 g20285 i0 42.4 1.36559139784946 66 34 66.7 2 203 18 89 154 OIO12074.1 MAG: hypothetical protein AUJ52_00965 [Elusimicrobia bacterium CG1_02_63_36] diamond 381 57 1 Bacteria   Pseudomonadati Elusimicrobiota         Elusimicrobia bacterium CG1_02_63_36
29695378 29695378 PRJNA352610_P_NODE_12170_length_342_cov_1.189591_g12109_i0 PRJNA352610 12170 342 1.189591 4.06840122 Candidatus Obscuribacterium magneticum 3022680 Bacteria Bacteria 92.8 2.88e-19   NR MCB4757685.1 3022680 g12109 i0 37.7 0.929824561403509 106 66 93 0 326 9 388 493 MCB4757685.1 NCS2 family permease [Candidatus Obscuribacterium magneticum] diamond 318 92.8 1 Bacteria   Pseudomonadati Elusimicrobiota Elusimicrobia     Candidatus Obscuribacterium Candidatus Obscuribacterium magneticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;