RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA352610" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA352610 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27345039 27345039 PRJNA352610_P_NODE_9183_length_381_cov_1.058442_g9122_i0 PRJNA352610 9183 381 1.058442 4.03266402 root 1 Root_unresolved Root_unresolved 150 2.3e-40   NR MAO99966.1 2026739 g9122 i0 58.8 10.3622047244094 119 49 93.7 0 3 359 76 194 MAO99966.1 cytosol nonspecific dipeptidase [Methanobacteriota archaeon] diamond 3948 151 0.993377483443709 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
28685570 28685570 PRJNA352610_P_NODE_21347_length_272_cov_1.547739_g21286_i0 PRJNA352610 21347 272 1.547739 4.20985008 Candidatus Thalassarchaeaceae archaeon 2670411 Archaea Archaea 64.3 1.28e-9   NR MCP2503036.1 2670411 g21286 i0 68.3 4.34558823529412 41 13 45.2 0 2 124 372 412 MCP2503036.1 pyridoxal phosphate-dependent aminotransferase [Candidatus Thalassarchaeaceae archaeon] diamond 1182 64.3 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales Candidatus Thalassarchaeaceae   Candidatus Thalassarchaeaceae archaeon
32351271 32351271 PRJNA352610_P_NODE_8399_length_393_cov_1.575000_g8338_i0 PRJNA352610 8399 393 1.575 6.18975 Methanothrix sp. 90426 Archaea Archaea 48.1 0.00237   NR MDD4162744.1 90426 g8338 i0 46.8 0.358778625954198 47 24 35.1 1 186 49 354 400 MDD4162744.1 PAN domain-containing protein [Methanothrix sp.] diamond 141 48.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;